PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010091882.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Protein Properties

Length: 103aa MW: 11908.8 Da PI: 10.4362

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010091882.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.1	2.1e-10	24	80	34	87
SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 34 ktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 + + d +g W++ + +rk+ g+ ++ ++GW +Fv+ +gL++gD ++++ +++ XP_010091882.1 24 VVVEAVDGKGYYWDFHCVIRKGEGTskpVFQSRGWLKFVNKKGLQVGDKITLYKKED 80 34566678889****987777667768888******************95432 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.91	1	95	IPR003340	B3 DNA binding domain
CDD	cd10017	5.13E-9	5	83	No hit	No description
SuperFamily	SSF101936	7.46E-9	19	80	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.5E-9	20	83	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.7E-8	21	81	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MKREFSVPVK WLGILPDFGG GHEVVVEAVD GKGYYWDFHC VIRKGEGTSK PVFQSRGWLK 60 FVNKKGLQVG DKITLYKKED RFRGTKYKIR AQKRNGEGMW VDV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010091882.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021824681.1	4e-25	uncharacterized protein LOC110765763
TrEMBL	W9QX63	2e-68	W9QX63_9ROSA; Uncharacterized protein
STRING	XP_010091882.1	3e-69	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2060	7	78

Link Out ? help Back to Top
Entrez Gene	21385138