PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010091969.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

WRKY

Protein Properties

Length: 192aa MW: 22042 Da PI: 5.7974

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010091969.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.9	7.5e-32	131	189	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++edp++v++tYeg Hnh+ XP_010091969.1 131 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDREDPRYVITTYEGVHNHQ 189 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-34	117	189	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-28	124	189	IPR003657	WRKY domain
PROSITE profile	PS50811	30.813	126	191	IPR003657	WRKY domain
SMART	SM00774	1.8E-37	131	190	IPR003657	WRKY domain
Pfam	PF03106	4.7E-25	132	189	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MITNSKYYSY PYSSLINMSS GTSNNNNLVP MYQSPENDFA DTQSSFDPFP DLSVFDEWQL 60 DEDSEHPVLM PHDSGSMPHP TYHASEVHDE SGGHSSQFGG HAGRGENESG RERRDTKERV 120 AFKTQSEAEI LDDGFKWRKY GKKMVKNSPN PRNYYRCSVE GCPVKKRVER DREDPRYVIT 180 TYEGVHNHQS SF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-25	121	188	7	74	Probable WRKY transcription factor 4
2lex_A	4e-25	121	188	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010091969.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010091969.1	1e-143	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	8e-45	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	W9R001	1e-142	W9R001_9ROSA; Putative WRKY transcription factor 50
STRING	XP_010091969.1	1e-143	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-45	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Entrez Gene	21387306

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]