PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010091976.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23689 Da    PI: 7.0699
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010091976.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.46.1e-264394151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeyss 51
                    k ien++nrqvt+skRrngi+KKA+ELSvLCda+v++i++  +  +++e+++
  XP_010091976.1 43 KMIENQTNRQVTYSKRRNGIFKKASELSVLCDAKVSIIMIPRNaTRVHEFCT 94
                    68*************************************9876257999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-313595IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.6653596IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-3136124IPR002100Transcription factor, MADS-box
CDDcd002655.38E-3436115No hitNo description
PRINTSPR004047.1E-193757IPR002100Transcription factor, MADS-box
PfamPF003192.0E-214592IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-195772IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-197293IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDFKSDIDLI HHGEEDHHDH DHDDQDHDQK KPIKMGRGKI QCKMIENQTN RQVTYSKRRN  60
GIFKKASELS VLCDAKVSII MIPRNATRVH EFCTPGSSTK EMLDRYQRAK GIDVWKTLYE  120
VKSLEDRYFR LLHEITMILI SIDRHFLLLL YVLIMKAAQR EDSPYGPMYQ ENIGGGYESD  180
NIGQWGIQSF RFPPPQPSPE LSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010091976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018519.12e-96MADS-box protein CMB2 isoform X2
TrEMBLW9QPZ71e-151W9QPZ7_9ROSA; Floral homeotic protein DEFICIENS
STRINGXP_010091976.11e-151(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-35MIKC_MADS family protein