PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010092061.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Protein Properties

Length: 221aa MW: 25052 Da PI: 10.3786

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010092061.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.8	6.4e-16	132	215	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k++++s+v+ +l lp +f++++ + ++ +tl de+g+++e + rk++ l++GWk+F a++L +gD ++F+l++ s f XP_010092061.1 132 FIKTMLQSHVSGGFWLGLPVHFCKTNLLR--RDEVMTLIDEEGEEYETIYLARKTG----LSGGWKGFSVAHKLGDGDALIFQLIRPSAF 215 89**********************666..4558***********656665....**********************987777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.4E-18	126	217	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.9E-22	126	218	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.51E-24	130	217	No hit	No description
Pfam	PF02362	3.9E-13	132	215	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.223	132	221	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-19	132	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MVAAKRKVSS YEEIRLRRLE ENKNRLEALN LPNLAQALRN SSPLKPSPIK RVKKPRTPEK 60 EVVAVRRSGR VANKPTPVYK EVVFDRVVIP RRCIGKPRDL SNRVYASEEA RAEAIERAEK 120 AVSGLEPEYP NFIKTMLQSH VSGGFWLGLP VHFCKTNLLR RDEVMTLIDE EGEEYETIYL 180 ARKTGLSGGW KGFSVAHKLG DGDALIFQLI RPSAFKVIET L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010092061.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092061.2	1e-158	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	1e-81	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	W9RBU4	1e-159	W9RBU4_9ROSA; B3 domain-containing protein
STRING	XP_010092061.1	1e-160	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-62	B3 family protein

Link Out ? help Back to Top
Entrez Gene	21386904

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]