PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010092139.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C3H

Protein Properties

Length: 129aa MW: 14366.7 Da PI: 4.3209

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010092139.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4e-10	16	42	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG C+++H++ XP_010092139.1 16 PGVPNCVYYMRTGQCGYGVWCRYNHPR 42 5789*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.634	15	43	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-4	15	42	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-7	17	42	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	19	44	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	21	42	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MWQLGLTGGE SYPERPGVPN CVYYMRTGQC GYGVWCRYNH PRDRAAVAAA VRATREYPER 60 VGEPVCQNTL EEERQTQKTQ STSSLTRPNI QLPTIDRQKP VDLDAHLPPS DDDSPDDDSD 120 AGDAANLDD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010092139.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018843804.1	7e-34	PREDICTED: zinc finger CCCH domain-containing protein 32-like
Swissprot	Q84W91	3e-28	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	W9QQ15	1e-90	W9QQ15_9ROSA; Zinc finger CCCH domain-containing protein 32
STRING	XP_010092139.1	2e-91	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22451	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	4e-24	C3H family protein

Link Out ? help Back to Top
Entrez Gene	21400811