PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010092590.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 208aa MW: 22764 Da PI: 8.786

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010092590.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.7	5.1e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+ ++ p++q +++ +++k+FG+s +l++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+ XP_010092590.1 2 SCNGCRVLRKGCSETCVLRSCLqwidsPEAQGHATLFLAKFFGRSDLLSFVSSVPEHQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQT 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_010092590.1 97 AVETVLT 103 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.523	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR SCLQWIDSPE AQGHATLFLA KFFGRSDLLS FVSSVPEHQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQTAVET VLTGGVLRPM QGVLAPPPTT 120 MAMFDESSAA GRCTAPNRQY YPSSFFLKQD QANFRASVSV PNRRGGNTSA IERLRREHTI 180 SLSSEESVMT TSFGIGDRKE RKLLNLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010092590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092590.1	1e-153	LOB domain-containing protein 39
Swissprot	Q9SZE8	4e-68	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	W9SE37	1e-152	W9SE37_9ROSA; Uncharacterized protein
STRING	XP_010092590.1	1e-153	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	2e-70	LOB domain-containing protein 39

Link Out ? help Back to Top
Entrez Gene	21383826