PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010092808.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 195aa MW: 21939.4 Da PI: 7.6295

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010092808.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.6e-10	67	107	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++l+P a K++ +++Le+A++Y+k L XP_010092808.1 67 ARERRHRISDRFKILQSLVPGgA------KMDTVSMLEEAIQYVKFL 107 699***************966......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.402	58	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-12	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-12	64	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.78E-13	64	111	No hit	No description
SuperFamily	SSF47459	2.09E-13	66	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-7	67	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MNYFPSSTTT TTTQYSTSSS SRSCAASNNN KKEINKVKKG NSGNNNIKRS GNKGVMKLST 60 DPQSVAARER RHRISDRFKI LQSLVPGGAK MDTVSMLEEA IQYVKFLKTQ IWLHQTMINY 120 QFVDDQENYS QDHTPNAMFL TPPDHQCNVH DSSNGNVAVL DDQAPLEMLM VPDYNCAFGQ 180 GHETTSFEHA YGRYD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010092808.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092808.1	1e-148	transcription factor bHLH140
Swissprot	Q9M041	2e-31	BH140_ARATH; Transcription factor bHLH140
TrEMBL	W9R2D3	1e-147	W9R2D3_9ROSA; Uncharacterized protein
STRING	XP_010092808.1	1e-147	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-32	APRATAXIN-like

Link Out ? help Back to Top
Entrez Gene	21395273

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]