PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010092844.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 243aa MW: 25276.5 Da PI: 7.5301

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010092844.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.7	2.6e-40	25	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l++el XP_010092844.1 25 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVVSLQTEL 119 7*********************9989***************************************************************** PP DUF260 95 allkee 100 ++l+++ XP_010092844.1 120 SYLQAH 125 *99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.819	24	126	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-39	25	123	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MNTNQNPSSS SGGGGGGGGV GGGGPCGACK FLRRKCVPGC IFAPYFDSEQ GAAHFAAVHK 60 VFGASNVSKL LLHIPVHKRL DAVVTVCYEA QARLRDPVYG CVAHIFALQQ QVVSLQTELS 120 YLQAHLATLE LPSPPPAPPP PPSSLNPPPL SIADLPSASS VPATYDLSSL FEPIVQPWSM 180 QQRQLDPRQF GGSTGSSSTS GGGGDLQALA RELLHRHGSP PHGPVPCSDA SQSPSLSKRE 240 TDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-38	21	126	7	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-38	21	126	7	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010092844.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092844.1	1e-175	LOB domain-containing protein 30
Swissprot	O81323	2e-83	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	W9QS27	1e-174	W9QS27_9ROSA; Uncharacterized protein
STRING	XP_010092844.1	1e-175	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1771	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	4e-77	LOB domain-containing protein 18

Link Out ? help Back to Top
Entrez Gene	21405253

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]