PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093022.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 387aa    MW: 44049.3 Da    PI: 4.5297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093022.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_010093022.1 16 RGPWSPAEDLRLITFIQKHGHDNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding51.81.9e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e  +++++ lG++ W++Ia++++ gRt++++k+ w+++l
   XP_010093022.1  69 RGNFTQEEEEAMIKLHETLGNK-WSKIASYFP-GRTDNEIKNIWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.4911163IPR017930Myb domain
SuperFamilySSF466895.5E-3014110IPR009057Homeodomain-like
SMARTSM007177.0E-131565IPR001005SANT/Myb domain
PfamPF002495.3E-151663IPR001005SANT/Myb domain
CDDcd001672.37E-91863No hitNo description
PROSITE profilePS5129425.01164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2667118IPR009057Homeodomain-like
SMARTSM007171.0E-1468116IPR001005SANT/Myb domain
PfamPF002491.3E-1469114IPR001005SANT/Myb domain
CDDcd001672.52E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009866Biological Processinduced systemic resistance, ethylene mediated signaling pathway
GO:0071281Biological Processcellular response to iron ion
GO:0071732Biological Processcellular response to nitric oxide
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGKGRAPCCD KSQVKRGPWS PAEDLRLITF IQKHGHDNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTQEEEEAM IKLHETLGNK WSKIASYFPG RTDNEIKNIW NTHLKKRLPL  120
AKNSDSSGDE SKESSITYSS SSSFSSNPSC GKRGLESEEL GHRSDDESVP KRPCSNNDQL  180
TIVQEKLIDH DVQKEVTNPN DQLIITSTTT TTTSSASSHA SNMSNSTNTT QADHVSRDDD  240
HDQEDDQMAN NWLFDFMGPY DVSDILQEVN KPDTQADLMA PLEADYEFWN MLENLGTNFL  300
QQPNDQVQPQ SSNFNGEGHK GENIESWDWI RALENELGLT GNDNQNQQLV LEDQSHAMEE  360
QVPAEMYFHY DVEEKLPEES DPCLYLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-25161184105C-Myb DNA-Binding Domain
1msf_C2e-25161184105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346718e-35KM034671.1 Jatropha curcas clone JcMYB051 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093022.10.0transcription factor MYB63
TrEMBLW9REN00.0W9REN0_9ROSA; Myb-related protein Zm1
STRINGXP_010093022.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.13e-73myb domain protein 72