PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093140.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 454aa    MW: 49273.7 Da    PI: 5.4227
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093140.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.11.5e-113924513374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf+ AL+ar+ +s+ ++y+ l++++ +  +s + ++al+ ++ +sP++kfsh+t
  XP_010093140.1  92 GLLLQCAECVAMDNLDDATDLLPEIAELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTAKALALAQSHRIFNALQSYNSISPLVKFSHFT 186
                     58******************************************************************99************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     aNqaI +a++g +rvH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +  +++
  XP_010093140.1 187 ANQAIFQALDGVDRVHVIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGS----STELLESTGRRLADFASSLGLPFEFHPLEGKIGSITDPS 277
                     ****************************************************....99*************************988899999*** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     +L v++ Ea++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l    +++s er++vE+
  XP_010093140.1 278 QLGVRQSEATVVHWMH--HCLYDVTGSDLG----TLRLLTLLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDVSGADSLERHMVEQ 365
                     ***************9..888888888888....**********************.789*******************7777************ PP

            GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +l+g ei+n+va  g +r+ + + + +W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_010093140.1 366 QLFGCEIRNIVAVGGPKRTGEVK-VDRWGDELKRVGFRPVSLGGNPAAQASLLLGMYPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 451
                     *****************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.30264431IPR005202Transcription factor GRAS
PfamPF035145.1E-11192451IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLQSLVTQSP ITNPNPNPNP NPNPDAATSS SSSMKTKRVD RDSPGDDPSS KRPNSARDFS  60
GEATVSGEKA IEDQDDDVVV VEGESTGLRL LGLLLQCAEC VAMDNLDDAT DLLPEIAELS  120
SPFGTSPERV GAYFAHALQA RVISSCLGTY SPLTAKALAL AQSHRIFNAL QSYNSISPLV  180
KFSHFTANQA IFQALDGVDR VHVIDLDIMQ GLQWPGLFHI LASRSRKIRS MRITGFGSST  240
ELLESTGRRL ADFASSLGLP FEFHPLEGKI GSITDPSQLG VRQSEATVVH WMHHCLYDVT  300
GSDLGTLRLL TLLRPKLITI VEQDLSHGGS FLGRFVEALH YYSALFDALG DVSGADSLER  360
HMVEQQLFGC EIRNIVAVGG PKRTGEVKVD RWGDELKRVG FRPVSLGGNP AAQASLLLGM  420
YPWKGYTLVE ENGCLKLGWK DLSLLTASAW QPSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1619645225380Protein SCARECROW
5b3h_A1e-1619645224379Protein SCARECROW
5b3h_D1e-1619645224379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093140.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLW9QSP90.0W9QSP9_9ROSA; Uncharacterized protein
STRINGXP_010093140.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]