PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093193.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 512aa    MW: 56763.5 Da    PI: 7.0244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093193.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.7e-17318364455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  XP_010093193.1 318 VHNLSERRRRDRINEKMKALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 364
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-20312378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.254314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-18317368No hitNo description
PfamPF000103.1E-14318364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-20318372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-18320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MNNCISDWNF EGDLPINGQK NPTGGDHDLV EILWRNGQVV LHSQTHRKQA LNNPNDPRQV  60
QKHDHHDQQA TRACGSYGNS INMSQDDESA SWIHYPLEDS FEKEFCSNLF SDSPSCDPID  120
IDKVPIIRQF EEEKVSKFGA YETTTHVKGL KPSCHENQML PPRQYCNSAL QDHNMGSLGK  180
VVNFSQFSGP EKCDLRPSGG QGEGRECSVM TVGLSHCGSN QLPNDHDMIR KVIPQSESGK  240
TVTLEPTVTS SSGGSGSSLG RPCKQSTTTT SGNTNNKRKS RDEEELECQS KAAELESAVA  300
NKSSQRSGTL RKSRAAEVHN LSERRRRDRI NEKMKALQEL IPHSNKTDKA SMLDEAIEYL  360
KSLQLQLQVM WMGSGMAPMM FPGVQHYMSR MGMAMAPPAL PSIHNPMHLP RVPVVDQSML  420
VAPTTDQSVL CQTPAFNPLN YQNQMQNTSF PEQFARYMGF HSMQPVSQPL NIFRFSPQTV  480
QQSQSMVQHG NSTGPSNSGF PPDGGISGKM GK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322327ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093193.20.0transcription factor PIF4 isoform X1
TrEMBLW9QT820.0W9QT82_9ROSA; Uncharacterized protein
STRINGXP_010093193.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.24e-66phytochrome interacting factor 4