PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093275.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 142aa    MW: 16308.7 Da    PI: 10.4049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093275.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++  G g+W++ ++  g++R++k+c++rw +yl
   XP_010093275.1 15 KGPWTPEEDKKLIDYIATNGHGCWRSLPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding59.19.7e-1968113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+ ++++++  lG++ W++Ia +++ gRt++++k++w++yl
   XP_010093275.1  68 RGKFSEEEERIIINLHSVLGNK-WSKIATHLP-GRTDNEIKNFWNTYL 113
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3261062IPR017930Myb domain
SuperFamilySSF466891.58E-3112109IPR009057Homeodomain-like
SMARTSM007177.2E-151464IPR001005SANT/Myb domain
PfamPF002492.3E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-251669IPR009057Homeodomain-like
CDDcd001676.66E-111762No hitNo description
PROSITE profilePS5129428.91863117IPR017930Myb domain
SMARTSM007171.9E-1767115IPR001005SANT/Myb domain
PfamPF002491.7E-1768113IPR001005SANT/Myb domain
CDDcd001671.60E-1270113No hitNo description
Gene3DG3DSA:1.10.10.606.9E-2870117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRSPCCDEK SGLKKGPWTP EEDKKLIDYI ATNGHGCWRS LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEERIII NLHSVLGNKW SKIATHLPGR TDNEIKNFWN TYLRKKLLQM  120
GRSSRSNGQN SAFPKSLPAY ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093275.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019320.12e-87transcription factor MYB93, partial
SwissprotQ9S9Z23e-72MYB93_ARATH; Transcription factor MYB93
TrEMBLW9SDS71e-100W9SDS7_9ROSA; Transcription factor
STRINGXP_010093275.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-74myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]