PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093403.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family RAV
Protein Properties Length: 378aa    MW: 41332.4 Da    PI: 8.2972
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093403.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39.2e-1475123155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  XP_010093403.1  75 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 123
                     89****9888.8*********3.....5**********99*************98 PP
2B399.32.3e-31207306196
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+ tpsdv+k++rlv+pk++ae+h    + ++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++   +++
  XP_010093403.1 207 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSANTCKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVSFQRSTGPDKQ 301
                     89*************************9986677799**************************************************87667777 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     l++ +
  XP_010093403.1 302 LYIDW 306
                     77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-1775131IPR016177DNA-binding domain
PfamPF008472.9E-975123IPR001471AP2/ERF domain
CDDcd000182.29E-2675130No hitNo description
PROSITE profilePS5103220.45576131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-2176131IPR001471AP2/ERF domain
SMARTSM003808.2E-3076137IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.7E-41202310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-29206302IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-29206295No hitNo description
PfamPF023621.3E-28207306IPR003340B3 DNA binding domain
SMARTSM010191.4E-24207310IPR003340B3 DNA binding domain
PROSITE profilePS5086314.029207310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDGNSSTDES TTTESFTLSA SPAATPTPFK SPPAAESTLC RVGSGASSVV VDSEMITNAI  60
NGGADAESGR KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEDEA ARAYDVAAQR  120
FRGRDAVTNF KPLSETTEED EIESVFLNSH SKAEIVDMLR KHTYNDELEQ SKRNSFGIDG  180
NGNRKPSRTG LLFGSDLTAS MAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSANT  240
CKGVLLNFED VGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKSLKAGDIV SFQRSTGPDK  300
QLYIDWKARD VDSGSAGGAV GPVQMVRLFG VNIFKLPGSE MVEGIGIGIG GGCNGKRTRD  360
MELLELECSK KPRIIGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-6020432211127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093403.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324604e-58GU732460.1 Malus x domestica AP2 domain class transcription factor (AP2D36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093403.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-146RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLW9QTI00.0W9QTI0_9ROSA; AP2/ERF and B3 domain-containing transcription factor RAV1
STRINGXP_010093403.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-138related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]