PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093506.1
Common NameDREB5A
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 177aa    MW: 19751.9 Da    PI: 8.0627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093506.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-172271255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  XP_010093506.1 22 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 71
                    7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.54E-262181No hitNo description
SuperFamilySSF541715.82E-212280IPR016177DNA-binding domain
PfamPF008476.7E-112271IPR001471AP2/ERF domain
SMARTSM003801.5E-382285IPR001471AP2/ERF domain
PROSITE profilePS5103222.1552279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-302280IPR001471AP2/ERF domain
PRINTSPR003672.7E-112334IPR001471AP2/ERF domain
PRINTSPR003672.7E-116181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEEEGAARET AARQRGGESE KQYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSTPVAAAR  60
AYDTAVFYLR GPSARLNFPE LLVGENGGGG CGCGDMSAAS IRKKATEVGA RVDALETALR  120
HHHQHHRHHH HHHHHRLDGG GDAEMKPCGG FVNRVDLNKL PDPENSDGEC DWDRNSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-152179463ATERF1
3gcc_A7e-152179463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783790.0KF678379.1 Morus notabilis dehydration responsive element binding transcription factor (DREB5A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093506.11e-130ethylene-responsive transcription factor RAP2-10
SwissprotO221743e-58ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLW6FIY61e-128W6FIY6_9ROSA; Dehydration responsive element binding transcription factor
STRINGXP_010093506.11e-129(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-55DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]