PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093554.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 541aa    MW: 60870.8 Da    PI: 4.4654
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093554.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS126.63e-391685383374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL +  ea ++++ el + +L  +se +sp +++++R+a+     L++ + ++++        +++   + ++  aa+k+f++ +P+ kf+h+t
  XP_010093554.1 168 HLLRAYGEATENEQRELKEVILRCISEKVSPLRKTLERIAFN----LSQDVDDQGEY------LKQE---SFKNFDAAFKAFYQSFPYGKFAHFT 249
                     77888889999999999***********************97....56666662221......2222...356777899**************** PP

            GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl.vakr 185
                     aN+aIlea+  + e++Hi+Dfdi++GlQW  +++a a +   + +l++T + ++e +      + + eet+++L   A+ +g++++ + + + + 
  XP_010093554.1 250 ANSAILEAAPDDaETIHIVDFDIGEGLQWSQMIEATAWQ---QKTLKLTSIRREEIEaesdpLQWSFEETRKNLLGHARLFGLKLKVEEMgIDDL 341
                     ********988779***********************96...457*******9887787666677889********************9844446 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk......slsPk.....vvvvveqeadh...nsesFlerflealeyysa 266
                     +++l+  + + k +  la n+++ l ++   +v  +    e+L++ k      s+++k     ++v+++ + +    +  sF   f   + +y a
  XP_010093554.1 342 VSELNKAKKKGKGRKFLAFNCMVGLPHMR--RVRNRRLVMEFLRVAKdhllanSVNSKthnkgIIVMADGDPSQklkSCVSFSPFFDGHIAHYQA 434
                     66676666677779*********999997..33333333444443331111112333222233788888874432234449************** PP

            GRAS 267 lfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv. 359
                     l++s+e+++p +  e+r+++E  ++++ i+++   ++ +  e +e +    +  e+ G++  +ls++   +a+ ++r+ +s g r+e  +g    
  XP_010093554.1 435 LLESMESNFPIHLsEARMTMECLFVAPYISSLAWLQKWK--EVKEGF----HLGEALGLEDWSLSKESLIEAEEMVRNGSSYGVRIEGLNGNEAs 523
                     **********87559****************99999888..555555....456789******************************77655444 PP

            GRAS 360 lgWkdrpLvsvSaWr 374
                     l W++ pLv vSaW+
  XP_010093554.1 524 LEWRGVPLVRVSAWT 538
                     **************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.001140517IPR005202Transcription factor GRAS
PfamPF035141.0E-36168538IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MMQPEIFDQP SWQFYDVMDS TWDQVGNCSL SSMDATVGGG EFSAPFIPID CLSEISSVPF  60
PSSVISGESL QVAVCDDSLQ GMSFMEDFPI DLEGFQPDLC GEFESLYGSL EESMGSFPSQ  120
KFSGEENDLW SPSSSLKSEA SMDTISTQKV LILPGEDMEI ETEQSVSHLL RAYGEATENE  180
QRELKEVILR CISEKVSPLR KTLERIAFNL SQDVDDQGEY LKQESFKNFD AAFKAFYQSF  240
PYGKFAHFTA NSAILEAAPD DAETIHIVDF DIGEGLQWSQ MIEATAWQQK TLKLTSIRRE  300
EIEAESDPLQ WSFEETRKNL LGHARLFGLK LKVEEMGIDD LVSELNKAKK KGKGRKFLAF  360
NCMVGLPHMR RVRNRRLVME FLRVAKDHLL ANSVNSKTHN KGIIVMADGD PSQKLKSCVS  420
FSPFFDGHIA HYQALLESME SNFPIHLSEA RMTMECLFVA PYISSLAWLQ KWKEVKEGFH  480
LGEALGLEDW SLSKESLIEA EEMVRNGSSY GVRIEGLNGN EASLEWRGVP LVRVSAWTSQ  540
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1323353780374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093554.10.0nodulation-signaling pathway 2 protein
TrEMBLW9QTU40.0W9QTU4_9ROSA; Uncharacterized protein
STRINGXP_010093554.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.16e-18GRAS family protein