PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093567.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 531aa    MW: 59259.7 Da    PI: 7.6687
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093567.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.5e-33196253260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct ++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  XP_010093567.1 196 DDGYNWRKYGQKQVKGSENPRSYYKCTNPNCPMKKKVERSL-DGQITEIVYKGSHNHPK 253
                     8****************************************.***************85 PP
2WRKY105.92e-33355413159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++d+++v++tYeg+Hnh+
  XP_010093567.1 355 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASHDTRAVITTYEGKHNHD 413
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.202190254IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-28190254IPR003657WRKY domain
SuperFamilySSF1182902.88E-25192254IPR003657WRKY domain
SMARTSM007746.5E-37195253IPR003657WRKY domain
PfamPF031067.5E-26196252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37340415IPR003657WRKY domain
SuperFamilySSF1182901.96E-29347415IPR003657WRKY domain
PROSITE profilePS5081138.779350415IPR003657WRKY domain
SMARTSM007743.1E-39355414IPR003657WRKY domain
PfamPF031061.3E-25356413IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MGNIDQGNNN NNTSLSWGFS DQNGIEIPRF KSLQPPSFPL SPSPLSPSSY LANTTPFSPT  60
DFLNSPIFLS VSNALPSPTT GAFASQTFDW RSNSNDNKKE IEEEDNFFSD FSFQPQTGSA  120
STTSSFNFQA SSNTVSVEQS MERQQQAWDF NDKTKNQNTS FSIQKSEVKT EYPTHQNSVV  180
SSEPQYGQYV REQKSDDGYN WRKYGQKQVK GSENPRSYYK CTNPNCPMKK KVERSLDGQI  240
TEIVYKGSHN HPKPQSTRRS NGVQTCSHTN SGVNSDHSGH TMSNVVHEDS SDSIGEVGFN  300
RNSPTFNSGG DFDDNEPEAK RWKGEHENDV FSASGNRTVK EPRVVVQTTS EIDILDDGYR  360
WRKYGQKVVK GNPNPRSYYK CTSVGCPVRK HVERASHDTR AVITTYEGKH NHDVPAARGG  420
SSYAVSRPTP NNTTNETVTM PLRPMPLANH SNQSTYSSSV LNTRLPNSVA QPPYTLQMLQ  480
GQGSLGFSGF VKPAGMYVQV QQSEPEGLFF KTKEERKKEQ KDGTFFDSFL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37196416878Probable WRKY transcription factor 4
2lex_A4e-37196416878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093567.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093567.20.0probable WRKY transcription factor 33 isoform X2
SwissprotQ6B6R41e-125WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLW9R1U90.0W9R1U9_9ROSA; Putative WRKY transcription factor 33
STRINGXP_010093567.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-117WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]