PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093590.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 544aa    MW: 59735.5 Da    PI: 9.8397
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093590.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++++G g W++ +++ g+ R++k+c++rw +yl
   XP_010093590.1 14 KGAWTPEEDQKLVSYIQKHGEGAWRSLPQKSGLLRCGKSCRLRWANYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.13.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T eE++ +++++  lG++ W+ Ia+ ++ gRt++++k++w+++l
   XP_010093590.1  67 RGDFTSEEEKSILQLHSVLGNK-WSIIAKNLP-GRTDNEIKNHWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.784961IPR017930Myb domain
SuperFamilySSF466891.42E-2911108IPR009057Homeodomain-like
SMARTSM007175.3E-131363IPR001005SANT/Myb domain
PfamPF002492.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231568IPR009057Homeodomain-like
CDDcd001672.13E-101661No hitNo description
PROSITE profilePS5129426.32962116IPR017930Myb domain
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2569115IPR009057Homeodomain-like
CDDcd001673.63E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGRNPCCNIE GLRKGAWTPE EDQKLVSYIQ KHGEGAWRSL PQKSGLLRCG KSCRLRWANY  60
LKPDIKRGDF TSEEEKSILQ LHSVLGNKWS IIAKNLPGRT DNEIKNHWNT HLKRRSIEIK  120
NVDQNPVLGS MKIGDHPKPK SHLHVKRSIS TTTATTTSAH DRLLNELAAS NKLKASSCLA  180
SLAAPHNRKD DKAAASTPSS ILNKMATTCL KPKSHNLLNA VKAVLSQSPQ ASPMGKSVGN  240
VLIANSTSTI TITSGRFSDF EGGNSSTVME FSPRSKNARV LLNEMASKLS LLNRPDPISL  300
SGPDQSPAVD NNVMNINSLA SVLDGKELGE TCLFQDMGFD HYYDHQEVDL FKGIANAEEE  360
GDRDHNNHIV GDDLFNEHVH GFTSTGSTKK GASAYVDVCC KREKGREGEI GRSSRALIAT  420
LLLICRFFID SGRPIDGFRR PWSTVLSSFS TTGPNLPPEN HPQPHRQKLD LDVVTARSLR  480
PKNFVGFVSL MAATTPWEGS PALPHRDPPR RRKLDLHSSA SDHSNQRASS ASIISLSSSL  540
SWTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-3091152107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1508512PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019570.10.0transcription factor MYB41 isoform X1
TrEMBLW9QU950.0W9QU95_9ROSA; Transcription factor
STRINGXP_010093590.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18570.16e-60myb domain protein 51