PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010093603.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

M-type_MADS

Protein Properties

Length: 324aa MW: 36406.7 Da PI: 6.3513

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010093603.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.9	3.1e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+snrqvt+skRrngi KKA+ELS+LCd+++ +++fs+tg+ XP_010093603.1 9 KRLENSSNRQVTYSKRRNGIVKKAKELSILCDIDIVLLMFSPTGR 53 789****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	26.24	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-31	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.28E-24	2	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-21	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGRLKLKIKR LENSSNRQVT YSKRRNGIVK KAKELSILCD IDIVLLMFSP TGRPTLFQGE 60 RRKLESLEDL TSQVRVLQAQ LTGLQRRLSC WNNPDNINDL ELLRQMEDLL RESINRIQIY 120 KENFGKQHLM PVTCMSQFQN EITLPLVVGG VQEAQSVLWI PNNENRPLIL PHEPNFLPHG 180 DVQCATDALL PGCSSYFSSG CGKQMVVGDS GQLNNIEEGG CALNELSRSG AGLSLEFGEQ 240 YAYPSFGTST MEDKKMKPDV EMNLQATSVD YQVNRSCEMP TSLYDNTQQT WVSAFGPCGL 300 ALHSDNACQQ VCIPVILHFC FLLR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010093603.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019573.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	1e-67	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	W9R4H0	0.0	W9R4H0_9ROSA; Floral homeotic protein GLOBOSA
STRING	XP_010093603.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	6e-70	AGAMOUS-like 65

Link Out ? help Back to Top
Entrez Gene	21389920

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]