PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010093647.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

HSF

Protein Properties

Length: 406aa MW: 44781.2 Da PI: 6.3654

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010093647.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102.8	2.9e-32	10	140	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...................... CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...................... 74 Fl+k+y+++ed++++++isw+e g+sfvv+++ +fa+++LpkyFkh+nf+SFvRQLn+Y+ ++ + + XP_010093647.1 10 FLMKTYQLVEDPSTNDVISWNEAGTSFVVWKTADFARDLLPKYFKHNNFSSFVRQLNTYDGANLVCPGVLCRGvvigegfelegsligeedegnv 104 9*********************************************************99999988764448999***99999998888 PP .....X..TTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 75 .....k..ekiweFkhksFkkgkkellekikrkkse 103 k ++ weF++++F++g+kell++i+r+k++ XP_010093647.1 105 ikgfrKvvPDKWEFANENFRRGQKELLSEIRRRKTA 140 776651669**********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.4E-47	6	137	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.72E-29	7	75	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.3E-35	7	68	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.9E-16	10	33	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.9E-29	10	137	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-16	48	60	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-16	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.72E-29	104	137	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.3E-35	107	137	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MAQRSVPAPF LMKTYQLVED PSTNDVISWN EAGTSFVVWK TADFARDLLP KYFKHNNFSS 60 FVRQLNTYDG ANLVCPGVLC RGVVIGEGFE LEGSLIGEED EGNVIKGFRK VVPDKWEFAN 120 ENFRRGQKEL LSEIRRRKTA TASTAQAKPA GEGSSTPSNS GEDLGSTSTS SPESKNPGSV 180 ETAAVTVQFA DLSDENEKLK KDNEVLTSKL AQTKKQCDEL ITFLTKYMKV GPDQINRIMR 240 QGINCGSTRG GEDRDDDENE ADDHDDGDDG EEEGLKLFGV WLRGKDHNEK DQKNKKKRTR 300 GEETGFTGPH AKKMKGVDFH APPLMQSGKH LNHHSLSSLF PVHDHQAPTS ILASIFDTSR 360 LIGKLSSSRV GIGVVRLPTP PDEGILISKN SKLPMAITFL STLRLE

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MAQRSVPAPF LMKTYQLVED PSTNDVISWN EAGTSFVVWK TADFARDLLP KYFKHNNFSS  60
FVRQLNTYDG ANLVCPGVLC RGVVIGEGFE LEGSLIGEED EGNVIKGFRK VVPDKWEFAN  120
ENFRRGQKEL LSEIRRRKTA TASTAQAKPA GEGSSTPSNS GEDLGSTSTS SPESKNPGSV  180
ETAAVTVQFA DLSDENEKLK KDNEVLTSKL AQTKKQCDEL ITFLTKYMKV GPDQINRIMR  240
QGINCGSTRG GEDRDDDENE ADDHDDGDDG EEEGLKLFGV WLRGKDHNEK DQKNKKKRTR  300
GEETGFTGPH AKKMKGVDFH APPLMQSGKH LNHHSLSSLF PVHDHQAPTS ILASIFDTSR  360
LIGKLSSSRV GIGVVRLPTP PDEGILISKN SKLPMAITFL STLRLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-20	5	142	16	125	Heat shock factor protein 1
5d5u_B	5e-20	5	139	25	131	Heat shock factor protein 1
5d5v_B	5e-20	5	139	25	131	Heat shock factor protein 1
5d5v_D	5e-20	5	139	25	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010093647.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019588.1	0.0	heat shock factor protein HSF24
Swissprot	P22335	1e-100	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	W9R221	0.0	W9R221_9ROSA; Heat shock factor protein HSF24
STRING	XP_010093647.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7114	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	2e-83	heat shock factor 4

Link Out ? help Back to Top
Entrez Gene	21394344

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]