PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010093880.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 541aa MW: 58584.9 Da PI: 6.45

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010093880.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.9	2.4e-05	358	397	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010093880.1 358 RREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 397 9***************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.41E-8	336	401	No hit	No description
SuperFamily	SSF47459	3.01E-13	337	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-14	339	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.474	346	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-5	353	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MESAFKFMEM ESNELNSSDP SQDCFFKPQN WDDSSLDHQQ ACDPFESALS SIVSSPAAAN 60 SGAGDGAMIR ELIGRLGNIC SNNNSGEISP SQQSYNNNNN STNTSCYGTP LNSPPKLSLS 120 IADHHIRAKL NVPGSYFPPS LVPLSGDPGF AERAAKFSSL VNGQFGMNEA EFGYRSMARV 180 DPGKFSRGLS SGPGGRVSGS TPNSEKKDNQ ISRSLTPENG EFADSREGSS VSDHIPSGVF 240 GGKAENGNAK KRKSISRGKA KETNTPSSPK DAKVAGETSE SDAKRSKKDG ASSSGNEKEN 300 GGKAKAESGD GNEKQTKENS KPPEPPKDYI HVRARRGQAT DSHSLAERVR TDSLNEVRRE 360 KISERMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDFNMEA 420 LLSKDIFQSR GSFPHAPYLL DSSSLPAFPF GYHHPQQMPP LHNTISTATG TQFPVNPLSA 480 QALHRTPSLQ LPAMDGFAES DPQVPTFFED DLQSVVQMGF GQIQQQNFEG SMASPQMKVE 540 L

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MESAFKFMEM ESNELNSSDP SQDCFFKPQN WDDSSLDHQQ ACDPFESALS SIVSSPAAAN  60
SGAGDGAMIR ELIGRLGNIC SNNNSGEISP SQQSYNNNNN STNTSCYGTP LNSPPKLSLS  120
IADHHIRAKL NVPGSYFPPS LVPLSGDPGF AERAAKFSSL VNGQFGMNEA EFGYRSMARV  180
DPGKFSRGLS SGPGGRVSGS TPNSEKKDNQ ISRSLTPENG EFADSREGSS VSDHIPSGVF  240
GGKAENGNAK KRKSISRGKA KETNTPSSPK DAKVAGETSE SDAKRSKKDG ASSSGNEKEN  300
GGKAKAESGD GNEKQTKENS KPPEPPKDYI HVRARRGQAT DSHSLAERVR TDSLNEVRRE  360
KISERMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRMDFNMEA  420
LLSKDIFQSR GSFPHAPYLL DSSSLPAFPF GYHHPQQMPP LHNTISTATG TQFPVNPLSA  480
QALHRTPSLQ LPAMDGFAES DPQVPTFFED DLQSVVQMGF GQIQQQNFEG SMASPQMKVE  540
L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010093880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019748.1	0.0	transcription factor bHLH62
TrEMBL	W9QUS6	0.0	W9QUS6_9ROSA; Uncharacterized protein
STRING	XP_010093880.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-89	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21402833