PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093954.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 342aa    MW: 38140.6 Da    PI: 6.7113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093954.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-09166213455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +     +K   Ka +L + ++Y++sLq
  XP_010093954.1 166 SHSLAERLRREKISERMKMLQKLVPGC-----EKvTGKALMLDEIINYVQSLQ 213
                     8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.89E-10160217No hitNo description
SuperFamilySSF474593.93E-17160229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.593162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17162229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-10168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSGLLMDPQI QEGNCLSQFF PSDDCVHGTP FERSCSTKVA DLSDHDINND ENSVTKKHIM  60
ISTDSSTVVD NSKLESGEQV TQKVTTMDRK RRINRYGSSS NSSQSKEIVA RGKKQKNCSD  120
SSVKDNNNKE EKKVKQNKNG EGKKDQDEPP TGYIHVRARR GQATDSHSLA ERLRREKISE  180
RMKMLQKLVP GCEKVTGKAL MLDEIINYVQ SLQNQVEFLS MKLASLNPMF YDFGMDLDAF  240
LVRPVGLNTL ASQINQSVPQ CSQNQPTAVF AADHNSAVPA PTNFNVTAND YPILDNSDSL  300
LLQQGHRPSA FSNENGTLLW DVEDHRQSFL NPSGFSNLCS FN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3918264e-73FQ391826.1 Vitis vinifera clone SS0AFA9YF22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093954.20.0transcription factor bHLH137
SwissprotQ93W881e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLW9R5J10.0W9R5J1_9ROSA; Uncharacterized protein
STRINGXP_010093954.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]