PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093963.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 173aa    MW: 19927.4 Da    PI: 8.4515
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093963.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.82.7e-161970556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++t+ q++ Le+ F  +++++ae++ +LA++lg++ rq  +W+qNrRa++k
  XP_010093963.1 19 RRLTQAQVRLLETSFTTDHKLQAERKFQLATSLGMSPRQLAIWYQNRRARQK 70
                    379************************************************9 PP
2HD-ZIP_I/II96.13.5e-3117108293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     + rrl++ qv+lLE+sF++++kL+ erK +la++Lg++prq+a+W+qnrRAR kt+ +E dy++++ +++ + +e++rLekev  L++el++
  XP_010093963.1  17 RSRRLTQAQVRLLETSFTTDHKLQAERKFQLATSLGMSPRQLAIWYQNRRARQKTQTIEFDYRTIQLRLEDVLAEKRRLEKEVVMLKHELNK 108
                     789************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-151172IPR009057Homeodomain-like
PROSITE profilePS5007115.4181272IPR001356Homeobox domain
SMARTSM003899.0E-131576IPR001356Homeobox domain
CDDcd000865.29E-111672No hitNo description
PfamPF000461.5E-131970IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-152170IPR009057Homeodomain-like
PRINTSPR000317.3E-54352IPR000047Helix-turn-helix motif
PROSITE patternPS0002704770IPR017970Homeobox, conserved site
PRINTSPR000317.3E-55268IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDFHYIQTQD SSKLQQRSRR LTQAQVRLLE TSFTTDHKLQ AERKFQLATS LGMSPRQLAI  60
WYQNRRARQK TQTIEFDYRT IQLRLEDVLA EKRRLEKEVV MLKHELNKAQ QMQLLASSGA  120
VNSAANSDLP SVAVSAVDDH ASSSSLHNYS YGEENNVAQL QVEELYTCLS PWP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093963.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093963.11e-126homeobox-leucine zipper protein ATHB-40
TrEMBLW9R3041e-124W9R304_9ROSA; Homeobox-leucine zipper protein ATHB-21
STRINGXP_010093963.11e-125(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-26homeobox protein 21