PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010094333.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 235aa MW: 25750.3 Da PI: 8.6514

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010094333.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H XP_010094333.1 83 FKCEYCYQEFATSQALGGHQNAH 105 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.84E-5	82	110	No hit	No description
PROSITE profile	PS50157	11.385	83	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSCSSSSSKN FSADHEGKKK KPSSSSSSKV FKLFGFPVTS RDIQMPVNNT TIRPKPELPC 60 SNNNSNSYNY NYYNMSKRLS SRFKCEYCYQ EFATSQALGG HQNAHKSERK VAKLRAQFQL 120 GHPNYNVNNN PYQNPYYFVA SNYSTTSTGQ IIAVQAAAGS SLATSTSGVG AGAAAGGEVK 180 PMTENVDMSD HDHEYPKVSY NKGVCHGELG INYHDQGSDD LDLQLRLAPS NNLLD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010094333.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010094333.1	1e-176	zinc finger protein GIS
TrEMBL	W9R6H8	1e-174	W9R6H8_9ROSA; Zinc finger protein 6
STRING	XP_010094333.1	1e-175	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-11	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	21391141