PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094363.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23091.4 Da    PI: 9.8362
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094363.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.6e-232370249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + en sn+qvtfskRr g++KKA ELSvLC+ eva ++fs+++kl+ +
  XP_010094363.1 23 KLENGSNKQVTFSKRRSGLFKKAAELSVLCGSEVAALVFSPNDKLFAF 70
                    679******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-321473IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.9551474IPR002100Transcription factor, MADS-box
CDDcd002651.87E-341582No hitNo description
SuperFamilySSF554552.22E-271588IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-221636IPR002100Transcription factor, MADS-box
PfamPF003194.7E-232470IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-223651IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-225172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAVLNEITKE KKTQGRQRIE IKKLENGSNK QVTFSKRRSG LFKKAAELSV LCGSEVAALV  60
FSPNDKLFAF GHPSVDSVVL RYAHGTNTAA AAAASTSTNV VTHVSEEFNR DFVEAVKELE  120
AEKTRLAEEK KKAKIGGEKF WWDEGIEGMG MEELRQHMAA LIELRRRVAA RVQELKAAPP  180
ENATSLAGVV PPQPAFCHAR LGFGNGNMHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-1815101285MEF2 CHIMERA
6byy_B2e-1815101285MEF2 CHIMERA
6byy_C2e-1815101285MEF2 CHIMERA
6byy_D2e-1815101285MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094363.11e-154agamous-like MADS-box protein AGL61
TrEMBLW9QWE01e-152W9QWE0_9ROSA; Agamous-like MADS-box protein AGL62
STRINGXP_010094363.11e-153(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-32AGAMOUS-like 62