PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094407.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 442aa    MW: 49496.3 Da    PI: 9.9677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094407.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-09129171346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE ++l +++kq+  + +  Ia +++  Rt +++k+r+++
   XP_010094407.1 129 SWTKEETDRLFELCKQFDLR-FIVIADRFPSSRTVEELKNRYYS 171
                      7*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162823.7E-31102176IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466891.06E-7126178IPR009057Homeodomain-like
SMARTSM007176.5E-9126175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-7129174IPR009057Homeodomain-like
CDDcd116581.87E-18130172No hitNo description
PfamPF054996.2E-7319386IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
GO:0008168Molecular Functionmethyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDAKDILGLP KTAIPIPQEK KSRSQKDSQR KPDGISREVY ALTGGMPPLM PTIDSSQLKK  60
RPPVDEKITW QWLPFTNSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS IDIVQYTDEE  120
YAKHLADPSW TKEETDRLFE LCKQFDLRFI VIADRFPSSR TVEELKNRYY SVSRSILMAR  180
ATSPGDVTGN PLVKETYNVS QEKERKRALS MVLSQTKQQE RKDAEILADA KRISESRVAA  240
RGAEESELPV ASSAGHDNAD RADVPGDTVS PSLNVQLPSA AVAPSTLMAD NAATIASLRM  300
LRVYLRTYAL DQMIQAASSS AGLRTIKRVE QTLQDLGVNL KPRVPTKAVC AEHLELRKEI  360
LTLLNLQKQL QYKEAEGSSF RDHPYETPGT PKDRMFVPDS MSFGGERVGK RDQKRKAPGR  420
ISEAPSSPAQ SKRPRKLKAS DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A1e-19101185491DNA methyltransferase 1-associated protein 1
4iej_A1e-19101185491DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094407.20.0SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLW9R6Q20.0W9R6Q2_9ROSA; DNA methyltransferase 1-associated protein 1
STRINGXP_010094407.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]