PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094524.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family NAC
Protein Properties Length: 482aa    MW: 53977 Da    PI: 6.5051
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094524.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.42.8e-53211481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp ++k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+
  XP_010094524.1  21 LPPGFRFHPTDEELITFYLASKVYNGSFCG-VDIAEVDLNRCEPWELPDAAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSA 114
                     79*************************877.34***************8888999**************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +g+l g+kktLvfykgrap+gekt+Wvmheyrl
  XP_010094524.1 115 sSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148
                     78889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6316170IPR003441NAC domain
PROSITE profilePS5100559.99921170IPR003441NAC domain
PfamPF023652.0E-2722148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MLAIEEVLRE LSGEDVNEQG LPPGFRFHPT DEELITFYLA SKVYNGSFCG VDIAEVDLNR  60
CEPWELPDAA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSSRHTCKE EWVICRIYHK TGDKKNPLFQ  180
GRQSSSSSYL LEALPALMET TPPTSITNCT ATNNNTNTNS SSTNNNNSTN ISANISSVLM  240
LECQTQNPMQ GLLQNHPLFL NHVNVHQQEN HDQLIKSLNI AMNNNPVPVH HHLSQLNFPI  300
NHHELIQPNS FSVSPTTTTI TTSSASNKYA NNNNINPSAA AAAAASPSAF QSMLFKSLLS  360
NQDCTSKQQH ETTVPKQCKT EADFSHFQPI SPLPLSNPFH YHQHQDHYKN PYPQPQPQPL  420
LFDDQNMHDD DNDNHDYGVL GFSSALHDMS TSLAFNRAGF QSMLDPSLTK LPAGGESWPL  480
DA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-512117020168NAC domain-containing protein 19
3swm_B2e-512117020168NAC domain-containing protein 19
3swm_C2e-512117020168NAC domain-containing protein 19
3swm_D2e-512117020168NAC domain-containing protein 19
3swp_A2e-512117020168NAC domain-containing protein 19
3swp_B2e-512117020168NAC domain-containing protein 19
3swp_C2e-512117020168NAC domain-containing protein 19
3swp_D2e-512117020168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094524.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020105.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8511e-107NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLW9QWF70.0W9QWF7_9ROSA; Protein CUP-SHAPED COTYLEDON 3
STRINGXP_010094524.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-106NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]