PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010094567.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

WOX

Protein Properties

Length: 288aa MW: 33204.1 Da PI: 5.8118

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010094567.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.4e-21	115	175	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ XP_010094567.1 115 RQRWSPTPVQLQTLEKIFDEgNGTPSKQKIKDITTELcqhgQISETNVYNWFQNRRARSKR 175 89***************99************************************97 PP
2	Wus_type_Homeobox	97	1.5e-31	114	177	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Ptp Q++ Le+++++G tP+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq XP_010094567.1 114 ARQRWSPTPVQLQTLEKIFDEGNGTPSKQKIKDITTELCQHGQISETNVYNWFQNRRARSKRKQ 177 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-16	110	178	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.949	111	176	IPR001356	Homeobox domain
SMART	SM00389	3.9E-12	113	180	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-17	114	177	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-18	115	175	IPR001356	Homeobox domain
CDD	cd00086	2.89E-13	115	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVMEWKSEQH QHQQQQDHHH HHHQNHQRLQ KEEEEKLIVN GVSPKEGLGL MYVKVMTDEQ 60 MELLRRQISV YATICDKLAE MFNSVTSQHD FSGLKLGSLH YDPLMTYGGH KITARQRWSP 120 TPVQLQTLEK IFDEGNGTPS KQKIKDITTE LCQHGQISET NVYNWFQNRR ARSKRKQSTP 180 APNNAEPEVE TETQEEHLKD CTKPEEAEFC ENPDPREDNV YFPSPENIND CWALFHLARS 240 LGFESPHRVG LVAFRVSVVP ELMNWSASGS AIELQALPSW AGLDVDEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	176	RRARSKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010094567.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020122.1	1e-167	WUSCHEL-related homeobox 8
TrEMBL	W9R4P5	0.0	W9R4P5_9ROSA; WUSCHEL-related homeobox 8
STRING	XP_010094567.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-65	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Entrez Gene	21407585