PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094641.1
Common NameDREB5B
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 179aa    MW: 20542.6 Da    PI: 8.2953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094641.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.4e-1758107255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  XP_010094641.1  58 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 107
                     69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-3658121IPR001471AP2/ERF domain
PROSITE profilePS5103222.12858115IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2158116IPR016177DNA-binding domain
PfamPF008471.4E-1059107IPR001471AP2/ERF domain
PRINTSPR003678.5E-125970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3059116IPR001471AP2/ERF domain
CDDcd000186.09E-2759117No hitNo description
PRINTSPR003678.5E-1297117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MELGDQSDQY CCSTSSTSTN NSAEKRKPIR RQVQHQNHHH HHHHNHNHHH MNQAAEKPYR  60
GIRMRKWGKW VAEIREPNKR SRIWLGSYTT PVAAARAYDT AVFYLRGPSA RLNFPELIFQ  120
EDDRLTDMSA ASIRKRATEI GAKVDAIQTA LHATSSPSKS NPTPDLNEYP DPEDSDEDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1554115163ATERF1
3gcc_A4e-1554115163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783800.0KF678380.1 Morus notabilis dehydration responsive element binding transcription factor (DREB5B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094641.11e-134ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC307e-52RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLW6FHK71e-132W6FHK7_9ROSA; Dehydration responsive element binding transcription factor
STRINGXP_010094641.11e-133(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-53related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]