PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010094642.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

SRS

Protein Properties

Length: 149aa MW: 16051.7 Da PI: 8.991

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010094642.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	48.5	3e-15	2	51	113	154
DUF702 113 avfrcvrvssv.ddg.......eeelaYqtavsigGhvfkGiLydqGlee 154 a f+ vrvss+ ddg ++++aYqt+v igGhvfkGiLydqG+++ XP_010094642.1 2 ATFHVVRVSSMvDDGgpdhhhqQQQYAYQTSVGIGGHVFKGILYDQGPNH 51 89****99634433333333678*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-12	2	50	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.5E-15	2	49	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MATFHVVRVS SMVDDGGPDH HHQQQQYAYQ TSVGIGGHVF KGILYDQGPN HHHHDQISGA 60 YSSLGAADQI TSFAQQPNFV NLMSSTSRRS GSSAVGIDFN ARSSSSPPAV AIGQRPLFLG 120 SSSSSSWPMF HPPNGFSMSG MQFFPNRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010094642.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096177.2	1e-104	protein SHI RELATED SEQUENCE 1
TrEMBL	W9RJC1	1e-103	W9RJC1_9ROSA; Uncharacterized protein
TrEMBL	W9RPD6	1e-102	W9RPD6_9ROSA; Uncharacterized protein
STRING	XP_010094642.1	1e-103	(Morus notabilis)
STRING	XP_010096177.1	1e-103	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-13	SHI-related sequence 5

Link Out ? help Back to Top
Entrez Gene	21409545