PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094867.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 504aa    MW: 54987.2 Da    PI: 4.6054
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094867.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.3e-131756645
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    k +++vtfskRr+g+l KA+ L+   da++a++++s+tg+
  XP_010094867.1 17 KAKNYVTFSKRRKGLLNKAFDLCYYYDAQIALVVLSPTGN 56
                    5689**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-8163IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-151774IPR002100Transcription factor, MADS-box
PfamPF003196.4E-141760IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.891764IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MARKRGFNEA MEEGGRKAKN YVTFSKRRKG LLNKAFDLCY YYDAQIALVV LSPTGNPFAF  60
GHSSVDDVLH CYLGGQTTPM DGRFEAEERR RQTERLERLK RRMKELGQSR EMKKVKAWIE  120
REWGSCGTTL EELEVLKGKY LALLDNVRNR LSFSGKEEKI DVCPLAAVVG SSNEMSFSVE  180
KLGTGCGNFG FTSIRKSFGK EEKFDLTGFC PLSVVNSPND MSVEELGGNC AYFGTDSADT  240
SIRRRFGIGS FTSFSGNEER VDLIDVYPLS VVNSSNDMPY SVEKLGHTSM VKRLGIGSSS  300
SFFGATTGGV GPFNDYVNFD CVGMENYTTL FPHIGGACVS PLSSMDDISY SVETFGTSCA  360
NSCTDYVDSS MKRGLGISSS SSFFGDGVGT FNDHVDFDYA GMEGYTTLFP QIGGCVRPLA  420
AMDSPNDMSY AVEKFGATCS PSGTDSVGDG DGSVSNFGGG GGDTQNDLSL MEYSDTNCNY  480
NVVEISEDEV FHYLGHVNFE LLSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094867.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9QXH40.0W9QXH4_9ROSA; Agamous-like MADS-box protein AGL97
STRINGXP_010094867.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1884856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-12AGAMOUS-like 61