PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094906.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27934.3 Da    PI: 10.2002
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094906.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-181150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ tf kR++g++KK  ELS+LCd++++vii+s+
  XP_010094906.1 11 ITNDSARKATFKKRKKGLIKKITELSTLCDIDACVIIYSP 50
                    89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.759149IPR002100Transcription factor, MADS-box
CDDcd002664.40E-21285No hitNo description
SuperFamilySSF554552.88E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSARKAT FKKRKKGLIK KITELSTLCD IDACVIIYSP YDAQPEVYPS  60
PLGLQQVLAR FKKMPEMEQS KKMVNQECFL RQRIAKANEQ LKKQRKDNRE KEITRLMFQS  120
LTGAKGLQGL SILDLNDLGW LIEQNLKEIN RKMERIGGRQ MHESKPRPGI LAMHAAEKKA  180
RSDVEAEIRA PPGFEAKPQW FMDLMNQAHE QQQHVGFGAG GEELMLPHFG DQNNGHWSNG  240
FYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094906.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-65AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLW9R8450.0W9R845_9ROSA; Agamous-like MADS-box protein AGL80
STRINGXP_010094906.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-66AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]