PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095053.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 294aa    MW: 33640.7 Da    PI: 7.365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095053.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32.1e-092670345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT+eE +++  a + +      +W+++a++++ g++ ++++  + 
   XP_010095053.1 26 EWTKEENKKFESALAIYDETtpnRWAKVAEMIP-GKSVYDVIKQYK 70
                     7*****************99*************.*******98886 PP
2Myb_DNA-binding38.13.6e-12128172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
   XP_010095053.1 128 PWTKDEHRQFLLGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 172
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.2532276IPR017884SANT domain
SMARTSM007171.3E-102375IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-122579IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-42669IPR009057Homeodomain-like
CDDcd001671.12E-82672No hitNo description
PfamPF002497.3E-82671IPR001005SANT/Myb domain
PROSITE profilePS5129418.332121177IPR017930Myb domain
SuperFamilySSF466891.12E-15123177IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17124176IPR006447Myb domain, plants
SMARTSM007172.9E-10125175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-10125171IPR009057Homeodomain-like
PfamPF002496.7E-10128172IPR001005SANT/Myb domain
CDDcd001672.12E-8128173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
METLHPTWYL PNSSWLFQGI SQSSTEWTKE ENKKFESALA IYDETTPNRW AKVAEMIPGK  60
SVYDVIKQYK ELEEDVCDIE AGRVPIPGYF SPSDFTTIDL VDDRDDSFRK KPQSARASSD  120
HERKKGVPWT KDEHRQFLLG LLKYGKGDWR NISRNFVVTK TPTQVASHAQ KYFLRQHSGG  180
KDKRRPSIHD FTTVNLRESN TSPSENIINL PNFFDHSSVV HSEEAHKGLL DWNIPSEEAL  240
MVLGSTCGNL FMNSPYDISS PKLPLRQNLY GGGARFAAHT KPQSSMFEMQ TSRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-152389773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095053.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-87DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLW9R8G50.0W9R8G5_9ROSA; Transcription factor
STRINGXP_010095053.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.24e-90MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]