PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010095221.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

MYB_related

Protein Properties

Length: 70aa MW: 8045.19 Da PI: 7.5148

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010095221.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37	8.1e-12	17	47	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT++Ed ll+++v+ +G g+W+++ar XP_010095221.1 17 KGPWTADEDRLLIEYVRVHGEGRWNSVARLA 47 79**************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-12	11	47	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.8	12	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.93E-10	13	55	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-10	17	47	IPR001005	SANT/Myb domain
CDD	cd00167	4.81E-7	19	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MAGHMGWGII EEEGWRKGPW TADEDRLLIE YVRVHGEGRW NSVARLAACT ENSCFLLSQS 60 ITIFKHSRKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010095221.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT323921	3e-73	KT323921.1 Morus alba var. multicaulis isolate LOC122724841 transcription factor GAMYB-like protein (MYB3) mRNA, complete cds.
GenBank	KT323922	3e-73	KT323922.1 Morus alba var. multicaulis isolate LOC122724839 transcription factor GAMYB-like protein (MYB3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011462427.1	3e-25	PREDICTED: myb-related protein 305 isoform X2
Refseq	XP_024196901.1	3e-25	myb-related protein 340-like
TrEMBL	W9R6H9	9e-45	W9R6H9_9ROSA; Transcription factor GAMYB
STRING	XP_010095221.1	1e-45	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF27859	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	1e-19	myb domain protein 305

Link Out ? help Back to Top
Entrez Gene	21386326