PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095222.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 262aa    MW: 30668.6 Da    PI: 9.8509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095222.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
   XP_010095222.1 17 KGPWTADEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 64
                     79********************************************97 PP
2Myb_DNA-binding51.81.8e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_010095222.1  70 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.2251268IPR017930Myb domain
SuperFamilySSF466893.67E-3014111IPR009057Homeodomain-like
SMARTSM007174.3E-161666IPR001005SANT/Myb domain
PfamPF002496.4E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-231871IPR009057Homeodomain-like
CDDcd001673.48E-111964No hitNo description
SMARTSM007171.4E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129419.50369119IPR017930Myb domain
PfamPF002491.1E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2472118IPR009057Homeodomain-like
CDDcd001671.09E-974115No hitNo description
SuperFamilySSF819959.68E-5137175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAGHMGWGII EEEGWRKGPW TADEDRLLIE YVRVHGEGRW NSVARLAGLK RNGKSCRLRW  60
VNYLRPDLKR GQITPHEESI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKQA  120
KAASDASKKA KARLLKRQQF HQQQQLQQQQ QQQQHQQQYQ QQLQLNQMDF KRIMTLLEEN  180
EHKSAPQVRP EMAAAAYPQT VDEQNFLYSM LNLNGNVSAV PEAPINEDTL WDYGLWNMDD  240
FHGTNNFSSA CSTTKLACSR IW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261711827127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095222.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3239210.0KT323921.1 Morus alba var. multicaulis isolate LOC122724841 transcription factor GAMYB-like protein (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017974784.11e-115PREDICTED: protein ODORANT1
TrEMBLA0A0K0VKC60.0A0A0K0VKC6_MORAL; Transcription factor GAMYB-like protein
TrEMBLW9R8W60.0W9R8W6_9ROSA; Myb-related protein 305
STRINGXP_010095222.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-71myb domain protein 305