PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095299.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 484aa    MW: 53697.1 Da    PI: 5.0991
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095299.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_010095299.1 14 KGRWTAEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding57.53.1e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE+e++v++++ lG++ W++Ia++m+ gRt++++k++w+++l
   XP_010095299.1  67 RGNISSEEEEIIVKLHATLGNR-WSLIASHMP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.041961IPR017930Myb domain
SuperFamilySSF466893.37E-2811108IPR009057Homeodomain-like
SMARTSM007175.0E-121363IPR001005SANT/Myb domain
PfamPF002496.1E-141461IPR001005SANT/Myb domain
CDDcd001674.31E-91661No hitNo description
PROSITE profilePS5129425.86162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2565116IPR009057Homeodomain-like
SMARTSM007173.0E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001674.58E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051555Biological Processflavonol biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SSEEEEIIVK LHATLGNRWS LIASHMPGRT DNEIKNYWNS HLSRKIHIFR  120
RPITSATNTS PTDQTIPKIT DLTKVLNVPP KRKGGRASRL ASMKKKKKKN RSNIVNNNMQ  180
EDHGSSSTVS KNKTNDPKDQ GSSSSANDDH DHGEVVINHE LEIPEPQTPT MEKEITSLSL  240
KALDCDVDDH KDLDDYLLTE PISPPCHEAD HDHDDQSGSG IAQAGSSSDG EKKITSTDQN  300
SSTLLLCPSF TEEEALGPYD DKEGMLCFDD IIDSELLNPS GVLTLSEDSI GSIGAAQNNN  360
TICTSPNKDI NNSGNLSSNG DQICTTESWF SSSSMASSGI NFDDGGVDLW GWENTSKSTV  420
ALGHDHHHHH HEEAMWDQEK EKMLSLLWES DNWEGDHEDD NNHKFGSEII NSDKQNAMVA  480
WLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-23121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-221211656159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-221211656159MYB PROTO-ONCOGENE PROTEIN
1h8a_C9e-231211625128MYB TRANSFORMING PROTEIN
1mse_C6e-23121162105C-Myb DNA-Binding Domain
1msf_C6e-23121162105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150168KRKGGRASRLASMKKKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095299.10.0transcription factor MYB12
TrEMBLW9QYI90.0W9QYI9_9ROSA; Transcription factor
STRINGXP_010095299.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-75myb domain protein 111