PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095609.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 651aa    MW: 74428.4 Da    PI: 8.9895
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095609.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07461502240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W  eE ell ++ +++++g   +W+ I++++g+gR+ +++
   XP_010095609.1 461 KPWGREEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 502
                      68***********************************99876 PP
2Myb_DNA-binding26.61.4e-08594638345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W+   +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
   XP_010095609.1 594 VWSVVQERALVQALKTFPKEtnqRWERVATAVP-GKTVNQCKKKFA 638
                      7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1107.2E-2192197IPR001623DnaJ domain
SuperFamilySSF465651.83E-1994202IPR001623DnaJ domain
SMARTSM002716.1E-1395170IPR001623DnaJ domain
PfamPF002261.9E-1796175IPR001623DnaJ domain
PROSITE profilePS5007618.42596178IPR001623DnaJ domain
CDDcd062575.13E-1396167IPR001623DnaJ domain
PRINTSPR006251.2E-8101119IPR001623DnaJ domain
PRINTSPR006251.2E-8119134IPR001623DnaJ domain
PRINTSPR006251.2E-8150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
SuperFamilySSF466892.92E-7456503IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-4457502IPR009057Homeodomain-like
PROSITE profilePS512936.232458513IPR017884SANT domain
SMARTSM007178.8E-6459512IPR001005SANT/Myb domain
PfamPF002497.1E-6461502IPR001005SANT/Myb domain
CDDcd001672.48E-4462502No hitNo description
SuperFamilySSF466896.32E-9590640IPR009057Homeodomain-like
PROSITE profilePS512938.612590645IPR017884SANT domain
SMARTSM007171.7E-9591643IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-5594640IPR009057Homeodomain-like
PfamPF002494.0E-7594639IPR001005SANT/Myb domain
CDDcd001672.53E-6595641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MDVRSNVRLI SYSQEIVDGK PILVSSNSLP IKPLRFEPAG HSFHRAALRL VGHVEEVIDD  60
GDQKVADDKE QSYVPSSDSY SSKSKKKSGA EGKQQDHYAL LGLAHLRYLA TEEQIRKSYR  120
EVALKYHPDK QAALLLAEET EAAKQAKKDE IESHFKAIQE AYEALIDPVK RRIYDSTDEF  180
DDEIPTDCAP QDFFKVFGPA FMRNGRWSVA QPVPSLGDDS TSIAEVDSFY NFWYTFKSWR  240
EFPHADEFDL EQAESRDHKR WMERQNAKLS EKARKEEYAR IRSLVDNTYK RDPRILRRKE  300
EEKAEKQKKR EAKYLAKKLQ EEEAARAAEE ERRRKEEEEK RAAEAALQQK KVKEKEKKLL  360
RKERTRLRTL SNPAVSHKLL NISADDVESL CMELNTEQLR NICDKMEGKG GMEIAEVLRD  420
ARGYSGNSET KKEDEKKTPL QNGSVETNGS VSFSSFEKKE KPWGREEIEL LRKGMQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDSNKAF DSFLEKRKPA PTIASPLTTR  540
EELEGVSTPQ MPENGASQTD TSQDSSNRNT NTNKQNPSDS NAANGVSSSS DHDVWSVVQE  600
RALVQALKTF PKETNQRWER VATAVPGKTV NQCKKKFASM KENFRSKKSA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A6e-1919229520123Zuotin
5dje_B6e-1919229520123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020843.10.0dnaJ homolog subfamily C member 2
TrEMBLW9RMT10.0W9RMT1_9ROSA; DnaJ homolog subfamily C member 2
STRINGXP_010095609.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-129DnaJ domain ;Myb-like DNA-binding domain