PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095860.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 277aa    MW: 31962.6 Da    PI: 5.3599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095860.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd++l  +v+++G  +W+  +++ g+ R++k+c++rw +yl
   XP_010095860.1 14 RGAWSSEEDDKLRAYVERYGYWNWRELPKYAGLQRCGKSCRLRWMNYL 61
                     89********************************************97 PP
2Myb_DNA-binding55.61.2e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+ l++++++++G++ W++Ia+ ++ gRt++++k++w++
   XP_010095860.1  67 RGNYTAEEESLIIKLHEEHGNK-WSLIAANLP-GRTDNEIKNYWHT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.928961IPR017930Myb domain
SuperFamilySSF466895.24E-3011108IPR009057Homeodomain-like
SMARTSM007171.2E-91363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-221568IPR009057Homeodomain-like
CDDcd001672.46E-91661No hitNo description
PROSITE profilePS5129425.95262116IPR017930Myb domain
SMARTSM007173.4E-1766114IPR001005SANT/Myb domain
PfamPF002492.4E-1667110IPR001005SANT/Myb domain
CDDcd001674.53E-1369112No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVRAPFYDEN GIKRGAWSSE EDDKLRAYVE RYGYWNWREL PKYAGLQRCG KSCRLRWMNY  60
LRPDVRRGNY TAEEESLIIK LHEEHGNKWS LIAANLPGRT DNEIKNYWHT RLKKRKTHNK  120
TPTKSQLREL DRSCDESSQL CHSNNGETSE AESSINHSHI LDNHDHGAEV VSPAVPILES  180
SQSPTDTSTD TSGSSLFISH AYSSQSYTDY PSENNNYQSS SLEAFYQEYY TAGSDFWTQP  240
FLSSQNDDQY STCFGDGGTS SSHLSFYDDG MDYYFYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141157107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113117KRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095860.10.0transcription factor MYB14
TrEMBLW9R8A10.0W9R8A1_9ROSA; Myb-related protein Myb4
STRINGXP_010095860.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-55myb domain protein 9