PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095999.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 521aa    MW: 56146.4 Da    PI: 8.3102
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095999.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.5e-11136160226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+Gd+CkF H+
  XP_010095999.1 136 GEKDCAHYMLTRTCKFGDSCKFDHP 160
                     7889********************8 PP
2zf-CCCH34.53.5e-11187212227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f++t  Ck+G rCkF+H++
  XP_010095999.1 187 GQPDCPYFLKTQRCKFGLRCKFNHPK 212
                     5799********************96 PP
3zf-CCCH38.42.1e-12235259327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tGtCk+G++CkF+H++
  XP_010095999.1 235 EAPCAFYLKTGTCKFGSTCKFHHPK 259
                     789********************96 PP
4zf-CCCH38.42.1e-12311336126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+++H+
  XP_010095999.1 311 PGEPDCPFYLKTGSCKYGATCRYNHP 336
                     5789*********************9 PP
5zf-CCCH34.72.9e-11417437727
                     SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                     r++++tG+Ck+G+rCkF+H++
  XP_010095999.1 417 RYYMKTGECKFGERCKFHHPM 437
                     79*****************95 PP
6zf-CCCH382.7e-12469491527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tG Ck+G++CkF H+p
  XP_010095999.1 469 ICPYYLKTGACKFGATCKFDHPP 491
                     7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.507134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011134161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5135161IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8136160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4140159IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5185212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286185213IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8188212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5190215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4191213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854232260IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6232259IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10235259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6235260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5237258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892310338IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7310337IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10312336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5315337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4316335IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054414437IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8417437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5417437IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5417440IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.272417438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004464492IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7464491IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5467491IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10469491IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5469489IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MAGHLYGFGA AQSAAASGLS SIYAAAANSR ALTEPYFPAS LASSDPSNYP AAAAMFLSHT  60
DPYASHLTSL ASWHSAADDN SAAGIKRSSE ALYHPTVLGA PNTIGQSEAW YSTTALAKRF  120
KYEGASNLPI YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP IWVPEGGIPD WKEIPPIASE  180
ALPERLGQPD CPYFLKTQRC KFGLRCKFNH PKDKLAAEGA SENGDVTGLP ERPSEAPCAF  240
YLKTGTCKFG STCKFHHPKD IQLPSAGHDN GSSQHESAKK EGTAGDSNVL KSCVSFIPAI  300
YYNTKELPIR PGEPDCPFYL KTGSCKYGAT CRYNHPDRLA SSIGHAIVAS PAAGLNIVNS  360
VASLYQTIDP RLAQATGLFP SSVTTLAPLS RVLLLSDPTL RRPDRCLRQY AAASSVRYYM  420
KTGECKFGER CKFHHPMDRL ASTQLAGQAQ QQIVKLTLAG LPRREGSIIC PYYLKTGACK  480
FGATCKFDHP PPGEVMAKTT SQGIAEGEAG RDEENGGRSI Q
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818007e-73LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132557e-73LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021124.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-175C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLW9RB500.0W9RB50_9ROSA; Zinc finger CCCH domain-containing protein 37
STRINGXP_010095999.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-175floral homeotic protein (HUA1)