PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010096550.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NAC

Protein Properties

Length: 432aa MW: 48729.6 Da PI: 7.644

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010096550.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.9	7.9e-53	21	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ XP_010096550.1 21 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSS 114 579*************************.89***********9888999***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl XP_010096550.1 115 eGTKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 148 56667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-58	15	181	IPR003441	NAC domain
PROSITE profile	PS51005	56.92	21	181	IPR003441	NAC domain
Pfam	PF02365	5.6E-26	23	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MDHERSSTDH STDKVLVDEV MLPGFRFHPT DEELVGFYLK RKIQQRPLSI ELIKQLDIYK 60 YDPWDLPKLA STGEKEWYFY CPRDRKYRNS ARPNRVTRAG FWKATGTDRP IYSSEGTKCI 120 GLKKSLVFYK GRAAKGVKTD WMMHEFRLPS LTDHSVPSSK RSLDKSFPAN DSWAICRIFK 180 KTNSTAQRAL SHSWVSPLPE PISSSDHILF AKPTNNSQFS SETSINMSLT PRTSTPTSSA 240 NYFGSSNNDM QNSSPNSTTT TFSPVDFVPY KPYCADYSPN LLFPPLQTTS GVQAANDNIT 300 PSMLLNMSSI LGNNHFGCSS TSKASHHEDH IDLISGLSSV QEHCNSNGFS YDHILQENLG 360 NNIIGTYDHM IKNHSEAHHD QWEAVRSLGF PFNLPLPLST VVADPWKPSM IWDSLPCPTE 420 MSTNFPTTKC YT

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MDHERSSTDH STDKVLVDEV MLPGFRFHPT DEELVGFYLK RKIQQRPLSI ELIKQLDIYK  60
YDPWDLPKLA STGEKEWYFY CPRDRKYRNS ARPNRVTRAG FWKATGTDRP IYSSEGTKCI  120
GLKKSLVFYK GRAAKGVKTD WMMHEFRLPS LTDHSVPSSK RSLDKSFPAN DSWAICRIFK  180
KTNSTAQRAL SHSWVSPLPE PISSSDHILF AKPTNNSQFS SETSINMSLT PRTSTPTSSA  240
NYFGSSNNDM QNSSPNSTTT TFSPVDFVPY KPYCADYSPN LLFPPLQTTS GVQAANDNIT  300
PSMLLNMSSI LGNNHFGCSS TSKASHHEDH IDLISGLSSV QEHCNSNGFS YDHILQENLG  360
NNIIGTYDHM IKNHSEAHHD QWEAVRSLGF PFNLPLPLST VVADPWKPSM IWDSLPCPTE  420
MSTNFPTTKC YT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	23	188	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	23	188	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	23	188	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	23	188	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	23	188	22	174	NAC domain-containing protein 19
3swm_B	2e-52	23	188	22	174	NAC domain-containing protein 19
3swm_C	2e-52	23	188	22	174	NAC domain-containing protein 19
3swm_D	2e-52	23	188	22	174	NAC domain-containing protein 19
3swp_A	2e-52	23	188	22	174	NAC domain-containing protein 19
3swp_B	2e-52	23	188	22	174	NAC domain-containing protein 19
3swp_C	2e-52	23	188	22	174	NAC domain-containing protein 19
3swp_D	2e-52	23	188	22	174	NAC domain-containing protein 19
4dul_A	1e-52	23	188	19	171	NAC domain-containing protein 19
4dul_B	1e-52	23	188	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010096550.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096550.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-107	FEZ_ARATH; Protein FEZ
TrEMBL	W9RCM8	0.0	W9RCM8_9ROSA; Protein FEZ
STRING	XP_010096550.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-105	NAC family protein

Link Out ? help Back to Top
Entrez Gene	21384632

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]