PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096553.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 337aa    MW: 37602.6 Da    PI: 7.4049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096553.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.6e-14130181155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  XP_010096553.1 130 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 181
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.72E-13128185No hitNo description
SuperFamilySSF474596.28E-17128198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-14130195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MALEALSSSN ELFNFVIYDT ISATPSSYQD TNSSLVETTA TFLYDDDNNN NNISTTTSTF  60
LRPQDHHHHQ VGMNTGTTCS LTAKREPGAP ECGDRRAAQK VVLGAAQGSV RKKRRRKARV  120
CKNKEEAETQ RMTHIAVERN RRKQMNEHLS VLRSLMPESY VQRGDQASIV GGAIEFVKEL  180
EHLLQSLEAQ KLQLNLQGMN NINGGSDHDL DQDSKLLPPP FAQFFVYPQY TWSQISNKYT  240
SKTKAAIADI EVTLIETHAS LRILSRRSLK QLSKLVAGFQ TLHLTILHIN VTTLNPLVLY  300
SVSVKVEEAC LLTSVDDIAA AVHHMLRIIE EEAALCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RKKRRRK
2111116KKRRRK
3130141RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096553.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096553.10.0transcription factor bHLH71
SwissprotQ9C7T42e-70BH096_ARATH; Transcription factor bHLH96
TrEMBLW9RQI60.0W9RQI6_9ROSA; Uncharacterized protein
STRINGXP_010096553.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]