PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010096608.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 236aa MW: 26116 Da PI: 4.7228

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010096608.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.1	3.9e-40	7	108	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf+ ++ p++fa+vhk+FGasnv+kll +lp ++r+da++++ yeA ar+rdP+yG+v++i++lqqq+++l++e+ XP_010096608.1 7 SCGACKFLRRKCSSECIFAPYFCYDEaPSHFAAVHKVFGASNVSKLLLHLPVHNRSDAATTISYEALARMRDPIYGCVAHIFTLQQQIACLQEEI 101 6*********************8879***************************************************************** PP DUF260 95 allkeel 101 + l++++ XP_010096608.1 102 EILGNQI 108 *998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.074	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MTGFGSSCGA CKFLRRKCSS ECIFAPYFCY DEAPSHFAAV HKVFGASNVS KLLLHLPVHN 60 RSDAATTISY EALARMRDPI YGCVAHIFTL QQQIACLQEE IEILGNQIAN NLTAGIASCG 120 SSEATNNNNS SNVNETQIFP QNDAMNSQYY QNQQEILLSQ IGNSTENNNN QSGFDGHNMG 180 VHFPPFYGWG EENVPCHTFS DPLRKLFEGT EQEKFGNSPW LDDIPNMGNC IGPIWD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-35	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-35	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010096608.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096608.1	1e-178	LOB domain-containing protein 33
TrEMBL	W9R256	1e-177	W9R256_9ROSA; Uncharacterized protein
STRING	XP_010096608.1	1e-178	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	4e-58	LOB domain-containing protein 33

Link Out ? help Back to Top
Entrez Gene	21408058