PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096860.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 616aa    MW: 66683.2 Da    PI: 7.4998
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096860.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.32.4e-992466162374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+e+A+a+s+g++  a+++L+r  +  +p+ ++ qR+  +++ AL++r++     + +  p+ e     s e++aa++ ++++sP++ ++ +
  XP_010096860.1 246 KQSLMEAATAISEGKTDVASEILTRQGQVLNPRPNSEQRVLEFVASALKSRVNP----VENPPPVIELF---SLEHTAAVQSLHDLSPCFSLGLM 333
                     578**************************************************9....55444444444...99********************* PP

            GRAS  97 taNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp..egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                     +aN aI ea+  +       ++vH+iDfdi+qG+Q+++Ll+aL +R   ++pp  ++iT++++ ++g +e+l+++ge+L+++Ae lg+ +efnv 
  XP_010096860.1 334 AANLAIIEATLPDkppvskgNKVHVIDFDIGQGGQYVSLLRALVARHqnGKPPvGVKITTLAD-TNGGRERLNAVGEKLRQLAEGLGIVLEFNV- 426
                     *********865555666669*************************986445569********.779**************************9. PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                     v+ ++ +++ e+L ++ +E laVn++++l+r++desvs+e++rde+L+ vk + P+vvv+veqe+++n+++F++r+ e++ yy al+ds+e++ +
  XP_010096860.1 427 VSLKIGEVSRESLGCEADEPLAVNFAFKLYRTPDESVSTENPRDELLRRVKAMGPRVVVLVEQELNTNTAPFMARLNETCAYYGALLDSIESTTA 521
                     799******************************************************************************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                     r+++er+k  +e l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  pls+++ +  +   ++v+  g++v+ee+g +++gW++r+L+++S
  XP_010096860.1 522 RDNSERVKAVEEALSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLSQSVKTRLS--SNRVP-PGFTVKEENGGVCFGWMGRTLTVAS 613
                     ***9999988888*****************************************98865433..35565.9************************ PP

            GRAS 372 aWr 374
                      Wr
  XP_010096860.1 614 TWR 616
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.361219599IPR005202Transcription factor GRAS
PfamPF035148.2E-97246616IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MQSGFTGGGG GLPDLYAATG RSIAAAMNNN PSQPPYGSRP NLPGLFLDPT TSRIARHNPA  60
TTMIGKRTLA EFQSHQQYMP AQVNYLRSVK PRAYQHSSPI SPLSPIEFSP TTTAASETSY  120
SSLLSSQRFG LPILQQLRPQ PSTPAMQGAA YVNSAVQNRI PAVDSDKKMI NHRLQELEKQ  180
LLDDNDEEEG DPVSAITNNS NSEWSETIQN LISPNQSQKP VSPSPTSSSS SSSSSVASPA  240
TTTCSKQSLM EAATAISEGK TDVASEILTR QGQVLNPRPN SEQRVLEFVA SALKSRVNPV  300
ENPPPVIELF SLEHTAAVQS LHDLSPCFSL GLMAANLAII EATLPDKPPV SKGNKVHVID  360
FDIGQGGQYV SLLRALVARH QNGKPPVGVK ITTLADTNGG RERLNAVGEK LRQLAEGLGI  420
VLEFNVVSLK IGEVSRESLG CEADEPLAVN FAFKLYRTPD ESVSTENPRD ELLRRVKAMG  480
PRVVVLVEQE LNTNTAPFMA RLNETCAYYG ALLDSIESTT ARDNSERVKA VEEALSRKLG  540
NSVACEGRDR VERCEVFGKW RARMGMAGFE LKPLSQSVKT RLSSNRVPPG FTVKEENGGV  600
CFGWMGRTLT VASTWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-362476166375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021653.10.0scarecrow-like protein 8 isoform X1
RefseqXP_024021654.10.0scarecrow-like protein 8 isoform X2
SwissprotQ9FYR71e-173SCL8_ARATH; Scarecrow-like protein 8
TrEMBLW9RDH00.0W9RDH0_9ROSA; Uncharacterized protein
STRINGXP_010096860.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-166SCARECROW-like 8