PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096901.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 451aa    MW: 49703.3 Da    PI: 6.8356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096901.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-172572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ l+++v+ +G g+W+++ ++ g++R++k+c++rw ++l
   XP_010096901.1 25 KGPWTATEDQVLIEYVRAHGEGNWNAVQKHSGLNRCGKSCRLRWANHL 72
                     79******************************************9986 PP
2Myb_DNA-binding50.45e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T++E+ l++++++++G++ W++ a+ ++ gRt++++k++w++
   XP_010096901.1  78 KGAFTPDEERLILELHAKYGNK-WARMAAQLP-GRTDNEIKNYWNT 121
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9482072IPR017930Myb domain
SuperFamilySSF466891.05E-3023119IPR009057Homeodomain-like
SMARTSM007172.1E-152474IPR001005SANT/Myb domain
PfamPF002494.0E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-242679IPR009057Homeodomain-like
CDDcd001672.11E-112772No hitNo description
PROSITE profilePS5129425.95373127IPR017930Myb domain
SMARTSM007171.4E-1677125IPR001005SANT/Myb domain
PfamPF002492.5E-1578121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2580126IPR009057Homeodomain-like
CDDcd001672.27E-1280121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MIGNSGGAGS EGGASGSNGE GALKKGPWTA TEDQVLIEYV RAHGEGNWNA VQKHSGLNRC  60
GKSCRLRWAN HLRPNLKKGA FTPDEERLIL ELHAKYGNKW ARMAAQLPGR TDNEIKNYWN  120
TRVKRRKRQG LPLYPSDIQL SQNNPTTPPS NSITPTTPTT PTFPFQNHSP IPFSPTPPPH  180
SPLSSPLQSN PTLTSPHLFE PHSYPFSSSF TFHRPVPVLG TPLRFKSYPQ CSSSVPPTQL  240
SDASCFQFPM SFNPPALSQS VGSQFESGPM CSVKSELPSS QFPQMLQRQQ QQQQQPPIAG  300
DDKGEQQQQQ QPQIACDDKV TTSEKNSGLL EDLLENLLEE AQRSVESSSE VVAKEEPKEQ  360
MNSLPEDLSK LLNFSPNTLQ HVPHWYSDSG EIPSSQSLGV TNDNNLSLDM QHLASFFPVA  420
ASATTSEYAQ SQTPASWDTF PGICKGWFKH T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32231265107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096901.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096901.10.0transcription factor MYB97
TrEMBLW9R3220.0W9R322_9ROSA; Transcription factor GAMYB
STRINGXP_010096901.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-69myb domain protein 101