PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097054.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 542aa    MW: 58840 Da    PI: 9.3405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097054.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-0580102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_010097054.1  80 FICEICNKGFQRDQNLQLHRRGH 102
                     89*******************88 PP
2zf-C2H212.40.00049157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H + +
  XP_010097054.1 157 WKCEKCSKRYAVQSDWKAHSKIC 179
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.55E-779102No hitNo description
Gene3DG3DSA:3.30.160.601.5E-579102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84580102IPR007087Zinc finger, C2H2
PfamPF121716.6E-580102IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02280102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM0035597122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.55E-7152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MMKGLIVDDN MSNLTFASGE VSASSSTRNE SAANLYPQQS SASTNQPPPP KKKRSLPGNP  60
DPDAEVVALS PKTLLTTNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVVRKK  120
VYVCPEPTCV HHDPSRALGD LTGIKKHFFR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ETSTNTARAM MSTTALNNNN NTLLLSAASS  240
SQALLLPPHL DNMTQFGALN SLIKREAVQE AVVNVPPWLS PPPPLFSTAT PINNNVLDNS  300
FTQQQLVMSQ KPNPSPAPPA PSAFASATAL LQRAAQMGAT MSSNSNNRSS SFFKAHQMMS  360
PESSSTSIMG PNAAVLAHHQ MLMEAGSSTT STTHEHHDFE AAHLVHDMMS SLQTSAPPAN  420
HMIMAGTPTF GDQAAAAGAG NFLEVPSSSS TGRTVTGRTV TGAGGNSEAQ LMRSGASSTS  480
VVGSGNNNVN DGLTRDFLGL RTFPTHRDQF FNIVGLDQHM NSSTAFGDHQ KHHPDHQTPW  540
QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34153230372Zinc finger protein JACKDAW
5b3h_F9e-34153230372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106119KLKQRTNKEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097054.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097054.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLW9R3E00.0W9R3E0_9ROSA; Zinc finger protein MAGPIE
STRINGXP_010097054.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-115indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]