PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010097192.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

FAR1

Protein Properties

Length: 764aa MW: 88793.8 Da PI: 4.9195

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010097192.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.7	2.8e-21	154	237	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC a++++++ ++++w+v++ +leHnH + XP_010097192.1 154 NYYNCYAKEIGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEAKLEHNHLF 237 69*************************************998877.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.3E-19	154	237	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-26	359	448	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.852	645	681	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-6	656	683	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MTGDTTFSPP DEAMSPDPNL HITIEECSQN SGHLLEDEGD DLVNDCGQLF EIEGDDHENE 60 RDSKNDQFFD IESNGHENEG DDANEHLFDI EANSHENDRD VADEQLFDIE GNKHGDENKD 120 DQSVIDGQSG ASQRKVYSPP IVGMEFESYD DAYNYYNCYA KEIGFAIRVK SSWTKRNSKE 180 KRGAVLCCNC EGFKMVKEAN SRRKETRTGC LAMIRLRLVE SNRWRVDEAK LEHNHLFDPE 240 GAQNSKSHKR MDAGVKRKVE PTLDVEVRTI KLYRTPAVDT VCYGSPYSYK GESNNQSDWS 300 RRLKLKDGDA QLIQNFFCRA QLADPNFFYV MDFNDEGNLR NVFWIDSRSR AAYGYFGDVV 360 LFDTTCLLYN YEIPLVSFVG VNHHGQTILL GCGLLAVETL ETYIWLFRAW LTCLSGRPPQ 420 TIITNQCKAM QTAMAEVFPR AHHRLCLGNV VQSILENLGA LQDYKAFQMA LFRTVYDSLK 480 VDDFEMAWEE MIQRFGIKDY EWLRNLFEDR ERWAPVYSKD TFFAGMFHFQ KGESISFFFD 540 GFMHEKISLK EFFDIHDSVL EKKRQKEALD DFQSRDLSPM LKTRCYYELQ ISQVYTKDLF 600 SKFQDEIVMM SSCFNITQVH TNGSIATYMI KERDEEEMLR DVRNFEVVYD KPGAEVRCIC 660 GCFNFKGYLC RHALCILNYN GVEGIPFQYI LSRWRKDFRR LYVPDLGSNN VDITNPVQWF 720 DHLYKRAMQV VEEGMISHDH YMVAWQAFKE SLNKVRLVAD KNVL

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MTGDTTFSPP DEAMSPDPNL HITIEECSQN SGHLLEDEGD DLVNDCGQLF EIEGDDHENE  60
RDSKNDQFFD IESNGHENEG DDANEHLFDI EANSHENDRD VADEQLFDIE GNKHGDENKD  120
DQSVIDGQSG ASQRKVYSPP IVGMEFESYD DAYNYYNCYA KEIGFAIRVK SSWTKRNSKE  180
KRGAVLCCNC EGFKMVKEAN SRRKETRTGC LAMIRLRLVE SNRWRVDEAK LEHNHLFDPE  240
GAQNSKSHKR MDAGVKRKVE PTLDVEVRTI KLYRTPAVDT VCYGSPYSYK GESNNQSDWS  300
RRLKLKDGDA QLIQNFFCRA QLADPNFFYV MDFNDEGNLR NVFWIDSRSR AAYGYFGDVV  360
LFDTTCLLYN YEIPLVSFVG VNHHGQTILL GCGLLAVETL ETYIWLFRAW LTCLSGRPPQ  420
TIITNQCKAM QTAMAEVFPR AHHRLCLGNV VQSILENLGA LQDYKAFQMA LFRTVYDSLK  480
VDDFEMAWEE MIQRFGIKDY EWLRNLFEDR ERWAPVYSKD TFFAGMFHFQ KGESISFFFD  540
GFMHEKISLK EFFDIHDSVL EKKRQKEALD DFQSRDLSPM LKTRCYYELQ ISQVYTKDLF  600
SKFQDEIVMM SSCFNITQVH TNGSIATYMI KERDEEEMLR DVRNFEVVYD KPGAEVRCIC  660
GCFNFKGYLC RHALCILNYN GVEGIPFQYI LSRWRKDFRR LYVPDLGSNN VDITNPVQWF  720
DHLYKRAMQV VEEGMISHDH YMVAWQAFKE SLNKVRLVAD KNVL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010097192.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097192.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X1
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	W9RSB0	0.0	W9RSB0_9ROSA; Protein FAR1-RELATED SEQUENCE 8
STRING	XP_010097192.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Entrez Gene	21408423

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]