PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010097195.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

FAR1

Protein Properties

Length: 667aa MW: 77406.5 Da PI: 8.0409

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010097195.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.2	4.8e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leHnH l XP_010097195.1 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLADSKRWRILEVTLEHNHLL 143 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-19	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-30	262	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	549	585	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-4	558	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	560	587	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MEETSLSSVQ VLDPVCNEIQ MDRDGLTVEL DGQNSVSEGK KEFVAPAVGM EFETYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLADSKRW RILEVTLEHN HLLGAKIYKS IKKMGSGAKR ISQLTSDADV RTIKLYKALV 180 IDSGDNATSN SNPREAGVFS DHPDQLNLKK GDTQALYNYL CRMQLTNPNF FYLMDLNEEG 240 RLRNVFWVDA RSRAACGYFS DVIYFDNTYM SNKYEIPLVA FVGINHHGQS VLLGCGLLAG 300 ETTESYIWLF KAWLTCTFGR FPQTMITDRC KTLQNTIAEV FPRCHHRFSL SHIMKKVPEK 360 LGGLRNYDAI RKALIKAVYE SLKVIEFEAA WGFMIQRFVI GDHEWLRSLY EDRERWALVY 420 LKDTCFAGMA AARPGEALNP FFDKYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRSS 480 NPTLKTRCSF ELQLSKVYTR EIFHKFQFEV EEMYSCFSTM QLHVDGPIII FLVKERVMGE 540 GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK 600 DYKRLYILDH SSNTVDAGDR VQWFNQLYKS GLQIVEEGVI SLDNYKVALQ AFEESLNRVH 660 DVEENHE

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MEETSLSSVQ VLDPVCNEIQ MDRDGLTVEL DGQNSVSEGK KEFVAPAVGM EFETYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLADSKRW RILEVTLEHN HLLGAKIYKS IKKMGSGAKR ISQLTSDADV RTIKLYKALV  180
IDSGDNATSN SNPREAGVFS DHPDQLNLKK GDTQALYNYL CRMQLTNPNF FYLMDLNEEG  240
RLRNVFWVDA RSRAACGYFS DVIYFDNTYM SNKYEIPLVA FVGINHHGQS VLLGCGLLAG  300
ETTESYIWLF KAWLTCTFGR FPQTMITDRC KTLQNTIAEV FPRCHHRFSL SHIMKKVPEK  360
LGGLRNYDAI RKALIKAVYE SLKVIEFEAA WGFMIQRFVI GDHEWLRSLY EDRERWALVY  420
LKDTCFAGMA AARPGEALNP FFDKYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRSS  480
NPTLKTRCSF ELQLSKVYTR EIFHKFQFEV EEMYSCFSTM QLHVDGPIII FLVKERVMGE  540
GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK  600
DYKRLYILDH SSNTVDAGDR VQWFNQLYKS GLQIVEEGVI SLDNYKVALQ AFEESLNRVH  660
DVEENHE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010097195.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097195.2	0.0	uncharacterized protein LOC21408426
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	W9R3Q8	0.0	W9R3Q8_9ROSA; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_010097195.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Entrez Gene	21408426

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]