PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097197.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family FAR1
Protein Properties Length: 672aa    MW: 77132.7 Da    PI: 5.3996
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097197.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.63.6e-2260142290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn YAke GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH ++
  XP_010097197.1  60 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLTDTKRWRIIEVELEHNHLIS 142
                     9***************99997.66779**************99888.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1960142IPR004330FAR1 DNA binding domain
PfamPF105511.5E-27263356IPR018289MULE transposase domain
PROSITE profilePS509668.939550586IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-5561588IPR006564Zinc finger, PMZ-type
PfamPF044347.1E-4563583IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MDEVSLNTDP VGDDDGDDLE IEGDCAMTEY VSQTGIIQGE NPVPPAVGME FDSYEDVYYF  60
YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLTDTKRWRI IEVELEHNHL ISPASGKFYK SHKSLGVGTK RAPQLEGPEE VQKIRLFRTV  180
IIDTEANGSI DVDEVESGRS SDCSNQLKLK AGDSQAVQNF FCHSQLMDPN FFYVVDLNEK  240
GCLRNLFWAD AKAQVAYNYF GDVVSVDATC FTKEYEVPLV SFVGVNHHGQ SVLLGCGLLA  300
GKTIESYTWL FRAFLTCMSG RPPQVIITDQ CSTLQTAVAD VFPRASQCLC LSRIMQKLPE  360
KLGGLFEYDA IKAALSRAVY YSLKPEEFEA AWEDMIQRHG IGDQKWLQAL YEERKRWVPV  420
YLKDIFLAGM IPIQPDEIVS SLFEEFLNKH TPLREFLDKY DQALEKHYQL ESLADLDSKN  480
SCSMLKRRYY FEVQLSKLYT NEILRNFERE VEGMYSCVCS RQLNIDGTIA TYVVKEQIEV  540
DGNRRETRDY EVLYNPPEIE VLCICGTFNF KGYLCRHALL VLSQNGMEEI PPQYIISRWR  600
KDIVRNYVLN NSCRGIDVNN PVYRYDHLYK CIVQVVEEGR KSQDRYKVVV QALDGILNKL  660
RLSEDHVEAN IM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097195.20.0uncharacterized protein LOC21408426
TrEMBLW9RSB40.0W9RSB4_9ROSA; Protein FAR1-RELATED SEQUENCE 6
STRINGXP_010097197.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6