PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097400.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 129aa    MW: 14895.1 Da    PI: 10.8334
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097400.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde l+ ++k++G g+W+t +++ g+ R++k+c++rw +yl
   XP_010097400.1 32 KGPWTPEEDEVLATYIKRHGEGHWRTLPEHAGLLRCGKSCRLRWVNYL 79
                     79******************************99************97 PP
2Myb_DNA-binding46.67.7e-1585127145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+
   XP_010097400.1  85 RGPIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWN 127
                      566679****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2012783IPR017930Myb domain
SuperFamilySSF466895.99E-3129126IPR009057Homeodomain-like
SMARTSM007171.4E-133181IPR001005SANT/Myb domain
PfamPF002493.0E-163279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-233386IPR009057Homeodomain-like
CDDcd001672.29E-103479No hitNo description
PROSITE profilePS5129417.76584129IPR017930Myb domain
SMARTSM007175.0E-884129IPR001005SANT/Myb domain
PfamPF002491.6E-1386127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2187128IPR009057Homeodomain-like
CDDcd001678.44E-1090128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MIRNPSSFGH NSFSSSKQKS KTPCGRKVSI KKGPWTPEED EVLATYIKRH GEGHWRTLPE  60
HAGLLRCGKS CRLRWVNYLH PSIKRGPIAP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN  120
EIKNYWNRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26321297103B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097400.13e-91transcription repressor MYB5
SwissprotQ388501e-58MYB5_ARATH; Transcription repressor MYB5
TrEMBLW9R4B86e-90W9R4B8_9ROSA; Transcription repressor
STRINGXP_010097400.11e-90(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-60myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]