PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010097934.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

FAR1

Protein Properties

Length: 885aa MW: 100210 Da PI: 6.5551

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010097934.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50	1e-15	59	135	2	90
FAR1 2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF+ ++s+s++s k + +++r+fvC +eg ++++ ++ C+a+l+v+++ ++kw+vtk+++eH+H+++ XP_010097934.1 59 FYDEYARRLGFNSKVSQSSSSrsKPDCMTISREFVCGREGLKRRHGDT--------------CEAMLRVELKGQEKWVVTKFVKEHSHAMV 135 9********9888777666337788899********998888..............************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-12	59	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.4E-27	271	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.917	549	585	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-9	556	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-8	560	587	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence Send to blast
MDVEVIDVEG MGHRAMADDG DAEPNEGGDT NSTVHDDEDG ISEPYVGMEF DSEDAAKTFY 60 DEYARRLGFN SKVSQSSSSR SKPDCMTISR EFVCGREGLK RRHGDTCEAM LRVELKGQEK 120 WVVTKFVKEH SHAMVGPSKV HYLRPRRHFA GTAKNVAEAY QGVGTVPSGV MFVSMDGNRV 180 PVEKNVRNSL PVESNRLVKN IATINYPVRP GSRKRTLGRD AQNLLEYFKK MQAENPGFFY 240 AIQLDEDNHM TNVFWVDARS RTAYSHFGDA VTLDTSYRVY QYRVPFAPFT GVNHHGQTVL 300 FGCALLLDES EATFTWLFKT FLTAMNDRPP VSITTDQDRA IQVAVANAFP ESRHCISKWH 360 VLREGQEKLA HVCHAHPNFQ LELYNCINLT ETVEEFESSW NSILDKYDLR RNDWLQSLYN 420 ARAQWVPVYF RDSFFAAISP NKGYDGSFFE GYVNQQTTLP MFFRQYERAL ENWFEKEIGA 480 DFDTICTTPV LRTPSPMEKQ AADLYTRKIF TKFQEELVET FVYTANRIDG DGAISTFRVA 540 KFEDDNKAYI VTLNHPELRA DCSCQMFEYS GILCRHVLTV FTVTNVLKLP SHYILKRWTR 600 NAKTGSGLDE RSADIQGQES LTLRYNNLCR EAIRYAEEGA IATETYNAAM NALRDGGKKV 660 TIVKKNVAKV PPPTSQVSGT GYDDRKSSML ASDATPLLWP HQDEVLRRFN LNDAGAPVQN 720 VADLNLPRMA PVSLHRDDGT ENMVVLPCLK SMTWVMENKN STPGNRVAVI NLKLQDYSRS 780 PSAESEVKFQ LSRVSLEPML RSMAYISEQL STPANKVAVI NLKLVINLLS VQLQDTETTT 840 GESEVKFQVS RDTLGAMLRS MAYIREQLSN PSESQSEPLP KKQRK

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence Send to blast

MDVEVIDVEG MGHRAMADDG DAEPNEGGDT NSTVHDDEDG ISEPYVGMEF DSEDAAKTFY  60
DEYARRLGFN SKVSQSSSSR SKPDCMTISR EFVCGREGLK RRHGDTCEAM LRVELKGQEK  120
WVVTKFVKEH SHAMVGPSKV HYLRPRRHFA GTAKNVAEAY QGVGTVPSGV MFVSMDGNRV  180
PVEKNVRNSL PVESNRLVKN IATINYPVRP GSRKRTLGRD AQNLLEYFKK MQAENPGFFY  240
AIQLDEDNHM TNVFWVDARS RTAYSHFGDA VTLDTSYRVY QYRVPFAPFT GVNHHGQTVL  300
FGCALLLDES EATFTWLFKT FLTAMNDRPP VSITTDQDRA IQVAVANAFP ESRHCISKWH  360
VLREGQEKLA HVCHAHPNFQ LELYNCINLT ETVEEFESSW NSILDKYDLR RNDWLQSLYN  420
ARAQWVPVYF RDSFFAAISP NKGYDGSFFE GYVNQQTTLP MFFRQYERAL ENWFEKEIGA  480
DFDTICTTPV LRTPSPMEKQ AADLYTRKIF TKFQEELVET FVYTANRIDG DGAISTFRVA  540
KFEDDNKAYI VTLNHPELRA DCSCQMFEYS GILCRHVLTV FTVTNVLKLP SHYILKRWTR  600
NAKTGSGLDE RSADIQGQES LTLRYNNLCR EAIRYAEEGA IATETYNAAM NALRDGGKKV  660
TIVKKNVAKV PPPTSQVSGT GYDDRKSSML ASDATPLLWP HQDEVLRRFN LNDAGAPVQN  720
VADLNLPRMA PVSLHRDDGT ENMVVLPCLK SMTWVMENKN STPGNRVAVI NLKLQDYSRS  780
PSAESEVKFQ LSRVSLEPML RSMAYISEQL STPANKVAVI NLKLVINLLS VQLQDTETTT  840
GESEVKFQVS RDTLGAMLRS MAYIREQLSN PSESQSEPLP KKQRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010097934.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022375.1	0.0	protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	W9R5U7	0.0	W9R5U7_9ROSA; Protein FAR1-RELATED SEQUENCE 3
STRING	XP_010097934.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Entrez Gene	21392704

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]