PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098201.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 209aa    MW: 22557.6 Da    PI: 5.9612
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098201.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.6e-096592127
                    --S---SGGGGTS.--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                    +k +lC+ff+r    C++G+ C++aHg+
  XP_010098201.1 65 WKSSLCSFFRRQSgSCSHGAACRYAHGE 92
                    7999*****99777************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-136198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.24E-76297IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-46492IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5776493IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-76592IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAASPTPTNA HSPTETLTAS DPIPTKGQPS DSTFAADATA NGEKRKREAD QAEENHELSS  60
SHPLWKSSLC SFFRRQSGSC SHGAACRYAH GEDELRPRPD NSWDPTSERA KKLAKKSDVD  120
GDKCGANEDV MMTEDVVADE DGDGGGSDPG LSKCLVHLPR KWRSDDLNRF LSEQASAPRG  180
EALEKRLNSY ASQGRSWLRR TPLSGASGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022563.11e-120zinc finger CCCH domain-containing protein 24
TrEMBLW9RV831e-151W9RV83_9ROSA; Zinc finger CCCH domain-containing protein 24
STRINGXP_010098201.11e-152(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.12e-34C3H family protein